| Protein: | VID28 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 921 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VID28.
| Description | E-value | Query Range |
Subject Range |
|
|
415.0 | [0..2] | [919..6] |
|
|
357.0 | [0..2] | [859..6] |
|
|
303.0 | [0..280] | [639..208] |
|
|
286.0 | [0..485] | [808..64] |
|
|
283.0 | [0..504] | [808..76] |
|
Region A: Residues: [1-340] |
1 11 21 31 41 51
| | | | | |
1 MTVAYSLENL KKISNSLVGD QLAKVDYFLA PKCQIFQCLL SIEQSDGVEL KNAKLDLLYT 60
61 LLHLEPQQRD IVGTYYFDIV SAIYKSMSLA SSFTKNNSST NYKYIKLLNL CAGVYPNCGF 120
121 PDLQYLQNGF IQLVNHKFLR SKCKIDEVVT IIELLKLFLL VDEKNCSDFN KSKFMEEERE 180
181 VTETSHYQDF KMAESLEHII VKISSKYLDQ ISLKYIVRLK VSRPASPSSV KNDPFDNKGV 240
241 DCTRAIPKKI NISNMYDSSL LSLALLLYLR YHYMIPGDRK LRNDATFKMF VLGLLKSNDV 300
301 NIRCVALKFL LQPYFTEDKK WEDTRTLEKI LPYLVKSFNY
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [341-503] |
1 11 21 31 41 51
| | | | | |
1 DPLPWWFDPF DMLDSLIVLY NEITPMNNPV LTTLAHTNVI FCILSRFAQC LSLPQHNEAT 60
61 LKTTTKFIKI CASFAASDEK YRLLLLNDTL LLNHLEYGLE SHITLIQDFI SLKDEIKETT 120
121 TESHSMCLPP IYDHDFVAAW LLLLKSFSRS VSALRTTLKR NKI
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1ibrB |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [504-615] |
1 11 21 31 41 51
| | | | | |
1 AQLLLQILSK TYTLTKECYF AGQDFMKPEI MIMGITLGSI CNFVVEFSNL QSFMLRNGII 60
61 DIIEKMLTDP LFNSKKAWDD NEDERRIALQ GIPVHEVKAN SLWVLRHLMY NC
|
| Detection Method: | |
| Confidence: | 62.0 |
| Match: | 1ejlI |
| Description: | Importin alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [616-668] |
1 11 21 31 41 51
| | | | | |
1 QNEEKFQLLA KIPMNLILDF INDPCWAVQA QCFQLLRNLT CNSRKIVNIL LEK
|
| Detection Method: | |
| Confidence: | 62.0 |
| Match: | 1ejlI |
| Description: | Importin alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [669-825] |
1 11 21 31 41 51
| | | | | |
1 FKDVEYKIDP QTGNKISIGS TYLFEFLAKK MRLLNPLDTQ QKKAMEGILY IIVNLAAVNE 60
61 NKKQLVIEQD EILNIMSEIL VETTTDSSSN GNDSNLKLAC LWVLNNLLWN SSVSHYTQYA 120
121 IENGLEPGHS PSDSENPQST VTIGYNESVA GGYSRGK
|
| Detection Method: | |
| Confidence: | 62.0 |
| Match: | 1ejlI |
| Description: | Importin alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [826-921] |
1 11 21 31 41 51
| | | | | |
1 YYDEPDGDDS SSNANDDEDD DNDEGDDEGD EFVRTPAAKG STSNVQVTRA TVERCRKLVE 60
61 VGLYDLVRKN ITDESLSVRE KARTLLYHMD LLLKVK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
