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View Structure Prediction Details

Protein: VID28
Organism: Saccharomyces cerevisiae
Length: 921 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VID28.

Description E-value Query
Range
Subject
Range
gi|49527117 - gi|49527117|emb|CAG60755.1| unnamed protein product [Candida glabrata]
gi|50290747, gi|... - gi|50290747|ref|XP_447806.1| unnamed protein product [Candida glabrata], gi|49527117|emb|CAG60755.1|...
415.0 [0..2] [919..6]
gi|38603379 - gi|38603379|dbj|BAD02466.1| YIL017c homolog [Candida glabrata]
357.0 [0..2] [859..6]
PUB17_ARATH - U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1
303.0 [0..280] [639..208]
IMA1B_ORYSJ - Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155601 PE=1 SV=2
IMA1B_ORYSA - Importin alpha-1b subunit - Oryza sativa (Rice)
286.0 [0..485] [808..64]
gi|13752562 - gi|13752562|gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum]
283.0 [0..504] [808..76]

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Predicted Domain #1
Region A:
Residues: [1-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAYSLENL KKISNSLVGD QLAKVDYFLA PKCQIFQCLL SIEQSDGVEL KNAKLDLLYT  60
   61 LLHLEPQQRD IVGTYYFDIV SAIYKSMSLA SSFTKNNSST NYKYIKLLNL CAGVYPNCGF 120
  121 PDLQYLQNGF IQLVNHKFLR SKCKIDEVVT IIELLKLFLL VDEKNCSDFN KSKFMEEERE 180
  181 VTETSHYQDF KMAESLEHII VKISSKYLDQ ISLKYIVRLK VSRPASPSSV KNDPFDNKGV 240
  241 DCTRAIPKKI NISNMYDSSL LSLALLLYLR YHYMIPGDRK LRNDATFKMF VLGLLKSNDV 300
  301 NIRCVALKFL LQPYFTEDKK WEDTRTLEKI LPYLVKSFNY 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [341-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLPWWFDPF DMLDSLIVLY NEITPMNNPV LTTLAHTNVI FCILSRFAQC LSLPQHNEAT  60
   61 LKTTTKFIKI CASFAASDEK YRLLLLNDTL LLNHLEYGLE SHITLIQDFI SLKDEIKETT 120
  121 TESHSMCLPP IYDHDFVAAW LLLLKSFSRS VSALRTTLKR NKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 1ibrB
Description: Importin beta
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [504-615]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQLLLQILSK TYTLTKECYF AGQDFMKPEI MIMGITLGSI CNFVVEFSNL QSFMLRNGII  60
   61 DIIEKMLTDP LFNSKKAWDD NEDERRIALQ GIPVHEVKAN SLWVLRHLMY NC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 1ejlI
Description: Importin alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [616-668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNEEKFQLLA KIPMNLILDF INDPCWAVQA QCFQLLRNLT CNSRKIVNIL LEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 1ejlI
Description: Importin alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [669-825]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKDVEYKIDP QTGNKISIGS TYLFEFLAKK MRLLNPLDTQ QKKAMEGILY IIVNLAAVNE  60
   61 NKKQLVIEQD EILNIMSEIL VETTTDSSSN GNDSNLKLAC LWVLNNLLWN SSVSHYTQYA 120
  121 IENGLEPGHS PSDSENPQST VTIGYNESVA GGYSRGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 1ejlI
Description: Importin alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [826-921]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YYDEPDGDDS SSNANDDEDD DNDEGDDEGD EFVRTPAAKG STSNVQVTRA TVERCRKLVE  60
   61 VGLYDLVRKN ITDESLSVRE KARTLLYHMD LLLKVK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle