Protein: | VID28 |
Organism: | Saccharomyces cerevisiae |
Length: | 921 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VID28.
Description | E-value | Query Range |
Subject Range |
|
415.0 | [0..2] | [919..6] |
|
357.0 | [0..2] | [859..6] |
|
303.0 | [0..280] | [639..208] |
|
286.0 | [0..485] | [808..64] |
|
283.0 | [0..504] | [808..76] |
Region A: Residues: [1-340] |
1 11 21 31 41 51 | | | | | | 1 MTVAYSLENL KKISNSLVGD QLAKVDYFLA PKCQIFQCLL SIEQSDGVEL KNAKLDLLYT 60 61 LLHLEPQQRD IVGTYYFDIV SAIYKSMSLA SSFTKNNSST NYKYIKLLNL CAGVYPNCGF 120 121 PDLQYLQNGF IQLVNHKFLR SKCKIDEVVT IIELLKLFLL VDEKNCSDFN KSKFMEEERE 180 181 VTETSHYQDF KMAESLEHII VKISSKYLDQ ISLKYIVRLK VSRPASPSSV KNDPFDNKGV 240 241 DCTRAIPKKI NISNMYDSSL LSLALLLYLR YHYMIPGDRK LRNDATFKMF VLGLLKSNDV 300 301 NIRCVALKFL LQPYFTEDKK WEDTRTLEKI LPYLVKSFNY |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [341-503] |
1 11 21 31 41 51 | | | | | | 1 DPLPWWFDPF DMLDSLIVLY NEITPMNNPV LTTLAHTNVI FCILSRFAQC LSLPQHNEAT 60 61 LKTTTKFIKI CASFAASDEK YRLLLLNDTL LLNHLEYGLE SHITLIQDFI SLKDEIKETT 120 121 TESHSMCLPP IYDHDFVAAW LLLLKSFSRS VSALRTTLKR NKI |
Detection Method: | ![]() |
Confidence: | 7.0 |
Match: | 1ibrB |
Description: | Importin beta |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [504-615] |
1 11 21 31 41 51 | | | | | | 1 AQLLLQILSK TYTLTKECYF AGQDFMKPEI MIMGITLGSI CNFVVEFSNL QSFMLRNGII 60 61 DIIEKMLTDP LFNSKKAWDD NEDERRIALQ GIPVHEVKAN SLWVLRHLMY NC |
Detection Method: | ![]() |
Confidence: | 62.0 |
Match: | 1ejlI |
Description: | Importin alpha |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [616-668] |
1 11 21 31 41 51 | | | | | | 1 QNEEKFQLLA KIPMNLILDF INDPCWAVQA QCFQLLRNLT CNSRKIVNIL LEK |
Detection Method: | ![]() |
Confidence: | 62.0 |
Match: | 1ejlI |
Description: | Importin alpha |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [669-825] |
1 11 21 31 41 51 | | | | | | 1 FKDVEYKIDP QTGNKISIGS TYLFEFLAKK MRLLNPLDTQ QKKAMEGILY IIVNLAAVNE 60 61 NKKQLVIEQD EILNIMSEIL VETTTDSSSN GNDSNLKLAC LWVLNNLLWN SSVSHYTQYA 120 121 IENGLEPGHS PSDSENPQST VTIGYNESVA GGYSRGK |
Detection Method: | ![]() |
Confidence: | 62.0 |
Match: | 1ejlI |
Description: | Importin alpha |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [826-921] |
1 11 21 31 41 51 | | | | | | 1 YYDEPDGDDS SSNANDDEDD DNDEGDDEGD EFVRTPAAKG STSNVQVTRA TVERCRKLVE 60 61 VGLYDLVRKN ITDESLSVRE KARTLLYHMD LLLKVK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.516 | c.54.1 | IIA domain of mannose transporter, IIA-Man |
View | Download | 0.387 | a.28.3 | Retrovirus capsid protein C-terminal domain |
View | Download | 0.305 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
View | Download | 0.303 | d.6.1 | Prion-like |
View | Download | 0.292 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.292 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.256 | a.39.2 | Insect pheromon/odorant-binding proteins |