| Protein: | SKN7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 622 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKN7.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..622] | [1..622] |
|
|
1.0E-89 | [65..434] | [1..395] |
|
|
4.0E-88 | [375..611] | [1..239] |
|
|
3.0E-87 | [73..374] | [4..293] |
|
|
3.0E-87 | [73..374] | [4..293] |
|
|
1.0E-86 | [378..608] | [5..234] |
|
|
1.0E-86 | [375..607] | [1..225] |
|
|
3.0E-86 | [378..604] | [5..227] |
|
|
4.0E-86 | [377..607] | [12..243] |
|
|
8.0E-86 | [377..607] | [4..235] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MSFSTINSNV NKTTGDSNNN TTENSSTADL LGMDLLQSGP RLMNTMQPNN SSDMLHINNK 60
61 TNNVQQP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.461 | a.65.1 | Annexin |
| View | Download | 0.605 | d.95.2 | Homing endonucleases |
| View | Download | 0.425 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.494 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
| View | Download | 0.466 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.413 | d.58.17 | Metal-binding domain |
| View | Download | 0.404 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.401 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.399 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.370 | d.68.7 | R3H domain |
| View | Download | 0.355 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.350 | d.68.3 | SirA-like |
| View | Download | 0.336 | d.88.1 | SRF-like |
| View | Download | 0.336 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.323 | d.76.1 | GYF domain |
| View | Download | 0.322 | d.68.5 | C-terminal domain of ProRS |
| View | Download | 0.321 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.316 | d.58.17 | Metal-binding domain |
| View | Download | 0.306 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.301 | a.28.1 | ACP-like |
| View | Download | 0.299 | d.26.3 | Chitinase insertion domain |
| View | Download | 0.293 | d.15.8 | Translation initiation factor IF3, N-terminal domain |
| View | Download | 0.286 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.285 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.266 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.263 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.261 | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.261 | d.95.2 | Homing endonucleases |
| View | Download | 0.258 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.255 | a.2.3 | Chaperone J-domain |
| View | Download | 0.232 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.212 | d.201.1 | SRP19 |
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 4.84466441605416 | bayes_pls_golite062009 |
| nucleic acid binding | 4.57954522145536 | bayes_pls_golite062009 |
| transcription factor activity | 4.12685284895733 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.3918869755162 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.70025468248325 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| two-component response regulator activity | 0.290986349914258 | bayes_pls_golite062009 |
|
Region A: Residues: [68-201] |
1 11 21 31 41 51
| | | | | |
1 AGNTNISSAN AGAKAPANEF VRKLFRILEN NEYPDIVTWT ENGKSFVVLD TGKFTTHILP 60
61 NHFKHSNFAS FVRQLNKYDF HKVKRSPEER QRCKYGEQSW EFQHPEFRVH YGKGLDNIKR 120
121 KIPAQRKVLL DESQ
|
| Detection Method: | |
| Confidence: | 200.9897 |
| Match: | 1hks__ |
| Description: | Heat-shock transcription factor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [202-369] |
1 11 21 31 41 51
| | | | | |
1 KALLHFNSEG TNPNNPSGSL LNESTTELLL SNTVSKDAFG NLRRRVDKLQ KELDMSKMES 60
61 YATKVELQKL NSKYNTVIES LITFKTINEN LLNNFNTLCS TLANNGIEVP IFGDNGNRNP 120
121 TGNTNPATTT AIQSNNNTNN ASPATSTVSL QLPNLPDQNS LTPNAQNN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [370-500] |
1 11 21 31 41 51
| | | | | |
1 TVTLRKGFHV LLVEDDAVSI QLCSKFLRKY GCTVQVVSDG LSAISTLEKY RYDLVLMDIV 60
61 MPNLDGATAT SIVRSFDNET PIIAMTGNIM NQDLITYLQH GMNDILAKPF TRDDLHSILI 120
121 RYLKDRIPLC E
|
| Detection Method: | |
| Confidence: | 122.232149 |
| Match: | 1kgsA_ |
| Description: | PhoB; PhoB receiver domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [501-622] |
1 11 21 31 41 51
| | | | | |
1 QQLPPRNSSP QTHSNTNTAN SNPNTINEQS LAMLPQDNPS TTTPVTPGAS ISSAQHVQQG 60
61 QQEQQHQIFH AQQQQQHHNA IANARSDVAI PNLEHEINTV PHSSMGSTPQ LPQSTLQENQ 120
121 LS
|
| Detection Method: | |
| Confidence: | 122.232149 |
| Match: | 1kgsA_ |
| Description: | PhoB; PhoB receiver domain |
| Matching Structure (courtesy of the PDB): |
|
