| Protein: | STB5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 743 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STB5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..743] | [1..743] |
|
|
2.0E-77 | [70..736] | [2..673] |
|
|
3.0E-77 | [53..736] | [4..689] |
|
|
3.0E-76 | [4..726] | [49..820] |
|
|
4.0E-74 | [5..733] | [2..645] |
|
|
1.0E-71 | [4..738] | [76..792] |
|
|
5.0E-71 | [4..738] | [76..792] |
|
|
7.0E-71 | [14..691] | [32..641] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MDGPNFAHQG GRSQRTTELY SCARCRKLKK KCGKQIPTCA NCDKNGAHCS YPGRAPRRTK 60
61 KELADAMLRG EYVPVKRNKK VGKSPLSTKS MPNSSSPLSA NGAITPGFSP Y
|
| Detection Method: |  |
| Confidence: | 33.201249 |
| Match: | 1cld__ |
| Description: | CD2-Lac9 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [112-175] |
1 11 21 31 41 51
| | | | | |
1 ENDDAHKMKQ LKPSDPINLV MGASPNSSEG VSSLISVLTS LNDNSNPSSH LSSNENSMIP 60
61 SRSL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.407 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.530 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.387 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.420 | a.17.1 | p8-MTCP1 |
| View | Download | 0.417 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.378 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.363 | a.64.1 | Saposin |
| View | Download | 0.348 | a.140.1 | LEM domain |
| View | Download | 0.340 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.305 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.289 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.283 | a.2.4 | Theta subunit of DNA polymerase III |
| View | Download | 0.281 | a.126.1 | Serum albumin-like |
| View | Download | 0.278 | a.4.1 | Homeodomain-like |
| View | Download | 0.264 | a.135.1 | Tetraspanin |
| View | Download | 0.260 | a.39.1 | EF-hand |
| View | Download | 0.243 | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.236 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.219 | a.39.1 | EF-hand |
| View | Download | 0.216 | a.4.1 | Homeodomain-like |
| View | Download | 0.212 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.201 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
|
Region A: Residues: [176-743] |
1 11 21 31 41 51
| | | | | |
1 PASVQQSSTT SSFGGYNTPS PLISSHVPAN AQAVPLQNNN RNTSNGDNGS NVNHDNNNGS 60
61 TNTPQLSLTP YANNSAPNGK FDSVPVDASS IEFETMSCCF KGGRTTSWVR EDGSFKSIDR 120
121 SLLDRFIAAY FKHNHRLFPM IDKIAFLNDA ATITDFERLY DNKNYPDSFV FKVYMIMAIG 180
181 CTTLQRAGMV SQDEECLSEH LAFLAMKKFR SVIILQDIET VRCLLLLGIY SFFEPKGSSS 240
241 WTISGIIMRL TIGLGLNREL TAKKLKSMSA LEAEARYRVF WSAYCFERLV CTSLGRISGI 300
301 DDEDITVPLP RALYVDERDD LEMTKLMISL RKMGGRIYKQ VHSVSAGRQK LTIEQKQEII 360
361 SGLRKELDEI YSRESERRKL KKSQMDQVER ENNSTTNVIS FHSSEIWLAM RYSQLQILLY 420
421 RPSALMPKPP IDSLSTLGEF CLQAWKHTYT LYKKRLLPLN WITLFRTLTI CNTILYCLCQ 480
481 WSIDLIESKI EIQQCVEILR HFGERWIFAM RCADVFQNIS NTILDISLSH GKVPNMDQLT 540
541 RELFGASDSY QDILDENNVD VSWVDKLV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [493-743] |
1 11 21 31 41 51
| | | | | |
1 RDDLEMTKLM ISLRKMGGRI YKQVHSVSAG RQKLTIEQKQ EIISGLRKEL DEIYSRESER 60
61 RKLKKSQMDQ VERENNSTTN VISFHSSEIW LAMRYSQLQI LLYRPSALMP KPPIDSLSTL 120
121 GEFCLQAWKH TYTLYKKRLL PLNWITLFRT LTICNTILYC LCQWSIDLIE SKIEIQQCVE 180
181 ILRHFGERWI FAMRCADVFQ NISNTILDIS LSHGKVPNMD QLTRELFGAS DSYQDILDEN 240
241 NVDVSWVDKL V
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
