| Protein: | SBP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 294 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBP1.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-65 | [4..278] | [97..366] |
|
|
1.0E-64 | [4..278] | [92..359] |
|
|
2.0E-64 | [4..278] | [120..388] |
|
|
2.0E-64 | [4..278] | [92..358] |
|
|
3.0E-64 | [4..278] | [120..388] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MSAEIEEATN AVNNLSINDS EQQPRAPTHK TVIDPEDTIF IGNVAHECTE DDLKQLFVEE 60
61 FGDEVSVEIP IKEHTDGHIP ASKHALVKFP TKIDFDNIKE NYDTKVVKDR EIHIKRARTP 120
121 GQMQRGGFRG RGGFRGRGGF RGGFRGGYRG
|
| Detection Method: |  |
| Confidence: | 25.0 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| mRNA binding | 4.52007814408702 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51665560478175 | bayes_pls_golite062009 |
| RNA binding | 4.50438526063124 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| transcription regulator activity | 1.7776932219095 | bayes_pls_golite062009 |
| DNA binding | 1.65208390030564 | bayes_pls_golite062009 |
| 1.49431666307335 | bayes_pls_golite062009 | |
| mRNA 5'-UTR binding | 1.30855696645617 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription repressor activity | 0.998305828880243 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.950575788044751 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.90573796517364 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.87797657439186 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| transcription factor activity | 0.795084003256395 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.461000905454505 | bayes_pls_golite062009 |
| hydrolase activity | 0.389390547875764 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.32812362201346 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.304235325881492 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [151-294] |
1 11 21 31 41 51
| | | | | |
1 GFRGRGNFRG RGGARGGFNG QKREKIPLDQ MERSKDTLYI NNVPFKATKE EVAEFFGTDA 60
61 DSISLPMRKM RDQHTGRIFT SDSANRGMAF VTFSGENVDI EAKAEEFKGK VFGDRELTVD 120
121 VAVIRPENDE EEIEQETGSE EKQE
|
| Detection Method: | |
| Confidence: | 25.0 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
