| Protein: | MAL13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 473 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAL13.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [9..473] | [4..470] |
|
|
0.0 | [9..473] | [4..470] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MTLTKQTCAK QACDCCRIRR VKCDGKRPCS SCLQNSLDCT YLQPSRKRGP KSIRLRSLKR 60
61 IAEVQRESGP NTI
|
| Detection Method: |  |
| Confidence: | 48.09691 |
| Match: | 1zmeC_ |
| Description: | PUT3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [74-352] |
1 11 21 31 41 51
| | | | | |
1 ATAPVIYKRV PKKLIDQCLR LYHDNLYVIW PLLSYDDLHK LLEEKYNDNY VYWFLTALSA 60
61 ATLSDLQTEI KSEEEVTFTG KQLSNLCISS CQQFDDLDNS NIFNIMTYYC LHRSFAQISN 120
121 ARTSYRLCCE AVGLITVAGL HREETYGSLT FEEQQLRRKL YYLLLMTERY YAIYLHCATS 180
181 LDATIAPPQL ELVTDPQLSM DSFLEMIRVF TVPGKCFFDA LAADSTDASC TEESLKKIWN 240
241 ELHTTSSEIE PWSNGYIDIS FSRHWIRILA WKLAYQMRG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [353-473] |
1 11 21 31 41 51
| | | | | |
1 SNFSLNANNG QIPIEIARDM LIDTYLTPEN LYDVHGPGVP VKTLEIATAL VDIVGQYDHN 60
61 MKLEAWNVLH DVCKFAFSLN HYNNDMLKRF STKCQNALIT LPISKPLQLD GYPKDNEDID 120
121 P
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.731 | a.74.1 | Cyclin-like |
| View | Download | 0.715 | a.118.8 | TPR-like |
| View | Download | 0.606 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.735 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.735 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.731 | a.74.1 | Cyclin-like |
| View | Download | 0.715 | a.118.8 | TPR-like |
| View | Download | 0.695 | a.74.1 | Cyclin-like |
| View | Download | 0.606 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.602 | e.20.1 | Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment |
| View | Download | 0.476 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.426 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.387 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.380 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.380 | a.24.4 | Hemerythrin |
| View | Download | 0.378 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.377 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.362 | a.92.1 | Carbamoyl phosphate synthetase, large subunit connection domain |
| View | Download | 0.361 | a.118.8 | TPR-like |
| View | Download | 0.359 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.353 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.343 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.342 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.341 | a.1.1 | Globin-like |
| View | Download | 0.339 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.334 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.333 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.331 | d.95.2 | Homing endonucleases |
| View | Download | 0.317 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.311 | a.4.1 | Homeodomain-like |
| View | Download | 0.310 | d.189.1 | PX domain |
| View | Download | 0.303 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.285 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.265 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.260 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.259 | d.95.2 | Homing endonucleases |
| View | Download | 0.254 | d.17.4 | NTF2-like |
| View | Download | 0.248 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.243 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.243 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.242 | a.74.1 | Cyclin-like |
| View | Download | 0.240 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.239 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.239 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.238 | c.10.1 | RNI-like |
| View | Download | 0.237 | a.74.1 | Cyclin-like |
| View | Download | 0.237 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.231 | a.29.2 | Bromodomain |
| View | Download | 0.229 | a.24.3 | Cytochromes |
| View | Download | 0.228 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.223 | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.213 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.208 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.206 | a.118.15 | Aconitase B, N-terminal domain |
| View | Download | 0.206 | a.47.2 | t-snare proteins |
| View | Download | 0.204 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.200 | d.150.1 | 4'-phosphopantetheinyl transferase |
