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View Structure Prediction Details

Protein: TAF1
Organism: Saccharomyces cerevisiae
Length: 1066 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF1.

Description E-value Query
Range
Subject
Range
TAF1 - TFIID subunit (145 kDa), involved in RNA polymerase II transcription initiation; possesses in vitro ...
TAF1_YEAST - Transcription initiation factor TFIID subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
0.0 [1..1066] [1..1066]
taf111 - transcription factor TFIID complex subunit Taf111
T111_SCHPO - Putative transcription initiation factor TFIID 111 kDa subunit OS=Schizosaccharomyces pombe (strain ...
0.0 [171..1056] [137..965]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [270..1057] [364..1370]
Taf1-PB - The gene TBP-associated factor 1 is referred to in FlyBase by the symbol Dmel\Taf1 (CG17603, FBgn001...
0.0 [270..1057] [364..1370]
gi|742875, gi|29733 - gi|742875|prf||2011225A CCG1 gene, gi|29733|emb|CAA30073.1| CCG1 protein [Homo sapiens]
0.0 [271..1064] [297..1234]
gi|19074685, gi|... - gi|19074685|ref|NP_586191.1| TRANSCRIPTION INITIATION FACTOR TFIID 111kDa SUBUNIT [Encephalitozoon c...
gi|19074685 - gi|19074685|ref|NP_586191.1| TRANSCRIPTION INITIATION FACTOR TFIID 111kDa SUBUNIT [Encephalitozoon c...
0.0 [233..951] [45..716]

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Predicted Domain #1
Region A:
Residues: [1-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKQQGSGKT NLANEDEAYE AIFGGEFGSL EIGSYIGGDE GANSKDYTEH LPDAVDFEDE  60
   61 DELADDDDDL PEESDANLHP AMMTMGAYDD VNENGAVLGI DSNSLNMQLP EINGDLSQQF 120
  121 ILEDDGGTPA TSNALFMGMD ANEIHLATET GVLDGSGANE IGHSQLSIGG VNGNDMSING 180
  181 GFIMEPDMSD GKHKKATKLD LINHEKYLLK KYFPDFEKGK ILKWNKLIYR RSVPYHWHSE 240
  241 ISRVKKPFMP LNLKFKVQQD DKRLFNSRTI SYVAPIYQGK NNLLQSNSSA SRRGLIHVSI 300
  301 DELFPIKEQQ KKRKIIH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [318-887]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKTISEDLL IATDDWDQEK IINQGTSSTA TLADSSMTPN LKFSGGYKLK SLIEDVAEDW  60
   61 QWDEDMIIDA KLKESKHAEL NMNDEKLLLM IEKTNNLAQQ KQQLDSSNLI LPLNETILQQ 120
  121 KFNLSNDDKY QILKKTHQTK VRSTISNLNI QHSQPAINLQ SPFYKVAVPR YQLRHFHREN 180
  181 FGSHIRPGTK IVFSKLKARK RKRDKGKDVK ESFSTSQDLT IGDTAPVYLM EYSEQTPVAL 240
  241 SKFGMANKLI NYYRKANEQD TLRPKLPVGE THVLGVQDKS PFWNFGFVEP GHIVPTLYNN 300
  301 MIRAPVFKHD ISGTDFLLTK SSGFGISNRF YLRNINHLFT VGQTFPVEEI PGPNSRKVTS 360
  361 MKATRLKMII YRILNHNHSK AISIDPIAKH FPDQDYGQNR QKVKEFMKYQ RDGPEKGLWR 420
  421 LKDDEKLLDN EAVKSLITPE QISQVESMSQ GLQFQEDNEA YNFDSKLKSL EENLLPWNIT 480
  481 KNFINSTQMR AMIQIHGVGD PTGCGEGFSF LKTSMKGGFV KSGSPSSNNN SSNKKGTNTH 540
  541 SYNVAQQQKA YDEEIAKTWY THTKSLSISN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [888-1066]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFEEMTNPDE INQTNKHVKT DRDDKKILKI VRKKRDENGI IQRQTIFIRD PRVIQGYIKI  60
   61 KEQDKEDVNK LLEEDTSKIN NLEELEKQKK LLQLELANLE KSQQRRAARQ NSKRNGGATR 120
  121 TENSVDNGSD LAGVTDGKAA RNKGKNTTRR CATCGQIGHI RTNKSCPMYS SKDNPASPK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle