| Protein: | LSC2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 427 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSC2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [14..426] | [36..445] |
|
|
0.0 | [19..426] | [3..407] |
|
|
0.0 | [1..427] | [1..427] |
|
|
0.0 | [18..426] | [3..408] |
|
|
0.0 | [12..423] | [3..412] |
|
|
0.0 | [29..426] | [1..395] |
|
Region A: Residues: [1-50] |
1 11 21 31 41 51
| | | | | |
1 MYSRKSLSLI SKCGQLSRLN AQAALQARRH LSIHEYRSAQ LLREYGIGTP
|
|
Region B: Residues: [139-278] |
1 11 21 31 41 51
| | | | | |
1 VDTKHEAYLS ILMDRQTKKP MIIASSQGGM NIEEVAERTP DAIKKFSIET SKGLSPQMAK 60
61 DVAKSLGFSP DAQDEAAKAV SNLYKIFMER DATQVEINPL SEIEHDPTHK IMCTDAKFGF 120
121 DDNASFRQEK IYSWRDLSQE
|
| Detection Method: |  |
| Confidence: | 1084.9691 |
| Match: | 1eucB_ |
| Description: | Succinyl-CoA synthetase, beta-chain, C-terminal domain; Succinyl-CoA synthetase, beta-chain, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| succinate-CoA ligase (GDP-forming) activity | 9.38156037766008 | bayes_pls_golite062009 |
| succinate-CoA ligase activity | 9.37213380498009 | bayes_pls_golite062009 |
| CoA-ligase activity | 8.19630272128785 | bayes_pls_golite062009 |
| acid-thiol ligase activity | 7.98453115335343 | bayes_pls_golite062009 |
| succinate-CoA ligase (ADP-forming) activity | 7.27105019329796 | bayes_pls_golite062009 |
| ligase activity, forming carbon-sulfur bonds | 7.23103788464777 | bayes_pls_golite062009 |
| ligase activity | 3.25077459445999 | bayes_pls_golite062009 |
| ATP citrate synthase activity | 3.09252003125984 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 3.07329302783164 | bayes_pls_golite062009 |
| catalytic activity | 2.5009559386228 | bayes_pls_golite062009 |
| CoA carboxylase activity | 1.75094739650292 | bayes_pls_golite062009 |
| ligase activity, forming carbon-carbon bonds | 1.59015373957506 | bayes_pls_golite062009 |
| acetyl-CoA carboxylase activity | 1.29064883699349 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups | 1.15639517822408 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.992008268375695 | bayes_pls_golite062009 |
| binding | 0.346654244533873 | bayes_pls_golite062009 |
| biotin carboxylase activity | 0.0172732430077291 | bayes_pls_golite062009 |
|
Region A: Residues: [51-138] |
1 11 21 31 41 51
| | | | | |
1 EGFPAFTPEE AFEAAKKLNT NKLVIKAQAL TGGRGKGHFD TGYKSGVHMI ESPQQAEDVA 60
61 KEMLNHNLIT KQTGIAGKPV SAVYIVKR
|
|
Region B: Residues: [279-427] |
1 11 21 31 41 51
| | | | | |
1 DPDEVKAKKY DLNFVKLKGN IGCLVNGAGL AMATMDVIKL NGGDPANFLD CGGGATPETI 60
61 KQGFELILSN KNVDAIFVNI FGGIVRCDYV ALGLVEAARE LEVRVPIVAR LQGTKVEEGR 120
121 DIINKSGVKI YSFDELDPAA KKVVELTQN
|
| Detection Method: | |
| Confidence: | 1084.9691 |
| Match: | 1eucB_ |
| Description: | Succinyl-CoA synthetase, beta-chain, C-terminal domain; Succinyl-CoA synthetase, beta-chain, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
