YRC Public Data Repository - Protein Structure Prediction

Protein:	AMA1
Organism:	Saccharomyces cerevisiae
Length:	562 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMA1.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	484.0	[0..44]	[561..1165]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	473.0	[0..46]	[560..1081]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	468.0	[0..59]	[561..915]
gi\|17225206 - gi\|17225206\|gb\|AAL37299.1\|AF323583_1 beta transducin-like protein HET-E2C*4 [Podospora anserina]	462.0	[0..81]	[561..830]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	459.0	[0..66]	[561..623]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPHLYHRY NSKSSNKNIN SSGNSTEVDR FIPKSVSRNA YKSIPMLNGF DISYSELCEK  60
   61 SPSPERLSSP EFFNELRNTG HYESISTTNE FSMSSISS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSESQVTRSG SARASRNDYS KLTKEQKDHR KNIAHSLGFQ LPDRVFTFET TSAEILEKNK  60
   61 AIKNCFGPGS CAEIRSTFDF STLSPDVARY YIANSNARSA SPQRQIQRPA KRVKSHIPYR 120
  121 VLDAPCLRND FYSNLISWSR TTNNVLVGLG CSVYIWSEKE GAVSILDHQY LSEKRDLVTC 180
  181 VSFCPYNTYF IVGTKFGRIL LYDQKEFFHS SNTNEKEPVF VFQTESFKGI CCLEWFKPGE 240
  241 ICKFYVGEEN GNVSLFEIKS LHFPIKNWSK RQKLEDENLI GLKLHSTYQA QAQQVCGISL 300
  301 NEHANLLAVG GNDNSCSLWD ISDLDKPIKK FVLPHKAAVK AIAFCPWSKS LLATGGGSKD 360
  361 RCIKFW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	1erjA
Description:	Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [465-562]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTSTGTLLDE ICTSGQVTSL IWSLRHKQIV ATFGFGDTKN PVLITLYSYP KLSKLLEVRS  60
   61 PNPLRVLSAV ISPSSMAICV ATNDETIRFM NCGTIRRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.0
Match:	1gg2B
Description:	beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits