| Protein: | AMA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 562 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMA1.
| Description | E-value | Query Range |
Subject Range |
|
|
484.0 | [0..44] | [561..1165] |
|
|
473.0 | [0..46] | [560..1081] |
|
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468.0 | [0..59] | [561..915] |
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462.0 | [0..81] | [561..830] |
|
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459.0 | [0..66] | [561..623] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MATPHLYHRY NSKSSNKNIN SSGNSTEVDR FIPKSVSRNA YKSIPMLNGF DISYSELCEK 60
61 SPSPERLSSP EFFNELRNTG HYESISTTNE FSMSSISS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.430 | a.77.1 | DEATH domain |
| View | Download | 0.410 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.410 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.400 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.315 | a.77.1 | DEATH domain |
| View | Download | 0.315 | a.77.1 | DEATH domain |
| View | Download | 0.296 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.262 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.228 | a.77.1 | DEATH domain |
|
Region A: Residues: [99-464] |
1 11 21 31 41 51
| | | | | |
1 SSESQVTRSG SARASRNDYS KLTKEQKDHR KNIAHSLGFQ LPDRVFTFET TSAEILEKNK 60
61 AIKNCFGPGS CAEIRSTFDF STLSPDVARY YIANSNARSA SPQRQIQRPA KRVKSHIPYR 120
121 VLDAPCLRND FYSNLISWSR TTNNVLVGLG CSVYIWSEKE GAVSILDHQY LSEKRDLVTC 180
181 VSFCPYNTYF IVGTKFGRIL LYDQKEFFHS SNTNEKEPVF VFQTESFKGI CCLEWFKPGE 240
241 ICKFYVGEEN GNVSLFEIKS LHFPIKNWSK RQKLEDENLI GLKLHSTYQA QAQQVCGISL 300
301 NEHANLLAVG GNDNSCSLWD ISDLDKPIKK FVLPHKAAVK AIAFCPWSKS LLATGGGSKD 360
361 RCIKFW
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| Detection Method: | |
| Confidence: | 46.30103 |
| Match: | 1erjA |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [465-562] |
1 11 21 31 41 51
| | | | | |
1 HTSTGTLLDE ICTSGQVTSL IWSLRHKQIV ATFGFGDTKN PVLITLYSYP KLSKLLEVRS 60
61 PNPLRVLSAV ISPSSMAICV ATNDETIRFM NCGTIRRK
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| Detection Method: | |
| Confidence: | 65.0 |
| Match: | 1gg2B |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
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