| Protein: | TFG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 735 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFG1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..735] | [1..735] |
|
|
2.0E-95 | [297..563] | [95..356] |
|
|
8.0E-4 | [185..338] | [33..195] |
|
|
0.004 | [349..416] | [97..167] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MSRRNPPGSR NGGGPTNASP FIKRDRMRRN FLRMRMGQNG SNSSSPGVPN GDNSRGSLVK 60
61 KDDPEYAEER EKMLLQIGVE ADAGRSNVKV KDEDPNEYNE FPLRAIPKED LENMRTHLLK 120
121 FQSKKKI
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.233 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.213 | d.206.1 | YggU-like |
|
Region A: Residues: [128-346] |
1 11 21 31 41 51
| | | | | |
1 NPVTDFHLPV RLHRKDTRNL QFQLTRAEIV QRQKEISEYK KKAEQERSTP NSGGMNKSGT 60
61 VSLNNTVKDG SQTPTVDSVT KDNTANGVNS SIPTVTGSSV PPASPTTVSA VESNGLSNGS 120
121 TSAANGLDGN ASTANLANGR PLVTKLEDAG PAEDPTKVGM VKYDGKEVTN EPEFEEGTMD 180
181 PLADVAPDGG GRAKRGNLRR KTRQLKVLDE NAKKLRFEE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 9.80911813987926 | bayes_pls_golite062009 |
| transcription initiation factor activity | 5.81303336834294 | bayes_pls_golite062009 |
| transcription regulator activity | 3.74982553633054 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.72386143594717 | bayes_pls_golite062009 |
| binding | 2.67974220661654 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.13156484215109 | bayes_pls_golite062009 |
| protein binding | 1.02443871942815 | bayes_pls_golite062009 |
| transcription activator activity | 0.71834071764197 | bayes_pls_golite062009 |
| transcription factor binding | 0.590528155685771 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.322693099994972 | bayes_pls_golite062009 |
| catalytic activity | 0.315768210630189 | bayes_pls_golite062009 |
|
Region A: Residues: [347-735] |
1 11 21 31 41 51
| | | | | |
1 FYPWVMEDFD GYNTWVGSYE AGNSDSYVLL SVEDDGSFTM IPADKVYKFT ARNKYATLTI 60
61 DEAEKRMDKK SGEVPRWLMK HLDNIGTTTT RYDRTRRKLK AVADQQAMDE DDRDDNSEVE 120
121 LDYDEEFADD EEAPIIDGNE QENKESEQRI KKEMLQANAM GLRDEEAPSE NEEDELFGEK 180
181 KIDEDGERIK KALQKTELAA LYSSDENEIN PYLSESDIEN KENESPVKKE EDSDTLSKSK 240
241 RSSPKKQQKK ATNAHVHKEP TLRVKSIKNC VIILKGDKKI LKSFPEGEWN PQTTKAVDSS 300
301 NNASNTVPSP IKQEEGLNST VAEREETPAP TITEKDIIEA IGDGKVNIKE FGKFIRRKYP 360
361 GAENKKLMFA IVKKLCRKVG NDHMELKKE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [552-606] |
1 11 21 31 41 51
| | | | | |
1 ENEINPYLSE SDIENKENES PVKKEEDSDT LSKSKRSSPK KQQKKATNAH VHKEP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [607-735] |
1 11 21 31 41 51
| | | | | |
1 TLRVKSIKNC VIILKGDKKI LKSFPEGEWN PQTTKAVDSS NNASNTVPSP IKQEEGLNST 60
61 VAEREETPAP TITEKDIIEA IGDGKVNIKE FGKFIRRKYP GAENKKLMFA IVKKLCRKVG 120
121 NDHMELKKE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
