Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR054W.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..623] | [918..1512] |
|
|
0.0 | [1..642] | [1..642] |
|
|
0.0 | [12..498] | [822..1256] |
|
Region A: Residues: [1-362] |
1 11 21 31 41 51
| | | | | |
1 MSSQFFLKTS QDIELFQSYP TFEQSNTNSK DFPVISSVLS PCGRFLALST KENVKVFTGP 60
61 CLDNVLLTMK LSDVYDLHFS PAGNYLSTWE RASIQDPNHK NVKVWYLNKP FKKDCVSEDI 120
121 VPAYEYQAKS QSGWFLQFSK LDNYGLRLFK HDLKIVKLSS ANADNFDFQS PFAVLSDDET 180
181 SQHFTTYLIS PAEHPTICTF TPEKGGKPAQ LIIWALSEGK ITKKIASKTF FKADSCQLKW 240
241 NPLGNAILCL AITDFDSSNK SYYGENTLYL LSFQGVNGTL GGNSVRVSLT TGPVHDFTWS 300
301 PTSRQFGVIA GYMPATISFF DLRGNVVHSL PQQAKNTMLF SPSGHYILIA GFGNLQGSVE 360
361 IL
|
| Detection Method: |  |
| Confidence: | 50.0 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural molecule activity | 5.05435272846365 | bayes_pls_golite062009 |
| snoRNA binding | 2.69983094099712 | bayes_pls_golite062009 |
| translation initiation factor activity | 2.29806492548141 | bayes_pls_golite062009 |
| binding | 1.99637157021613 | bayes_pls_golite062009 |
| RNA binding | 1.54614730254863 | bayes_pls_golite062009 |
| 1.53488375271101 | bayes_pls_golite062009 | |
| nucleic acid binding | 1.24195336789614 | bayes_pls_golite062009 |
| transcription regulator activity | 1.21914661317312 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| DNA binding | 0.694865434683509 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.523052412917759 | bayes_pls_golite062009 |
| mRNA binding | 0.273021928390838 | bayes_pls_golite062009 |
| transcription factor activity | 0.130013114814281 | bayes_pls_golite062009 |
|
Region A: Residues: [363-497] |
1 11 21 31 41 51
| | | | | |
1 DRLDKFKCVS KFDATNTSVC KWSPGGEFIM TATTSPRLRV DNGVKIWHVS GSLVFVKEFK 60
61 ELLKVDWRSP CNYKTLENKD EAFFENHIIN NWEPLPDSTT SSLDPKISNK SELQIHSSVQ 120
121 EYISQHPSRE ASSNG
|
| Detection Method: | |
| Confidence: | 20.30103 |
| Match: | 1gxrA_ |
| Description: | Groucho/tle1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-642] |
1 11 21 31 41 51
| | | | | |
1 NGSKAKAGGA YKPPHARRTG GGRIVPGVPP GAAKKTIPGL VPGMSANKDA NTKNRRRRAN 60
61 KKSSETSPDS TPAPSAPAST NAPTNNKETS PEEKKIRSLL KKLRAIETLK ERQAVGDKLE 120
121 DTQVLKIQTE EKVLKDLEKL GWKDE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.269 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.518 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.518 | 0.074 | ribosome | a.25.1 | Ferritin-like |
| View | Download | 0.442 | 0.004 | ribosome | a.63.1 | Apolipophorin-III |
| View | Download | 0.440 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.440 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.392 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.392 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.333 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.333 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.253 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.239 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.227 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.219 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.214 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.214 | N/A | N/A | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.205 | N/A | N/A | c.14.1 | ClpP/crotonase |
