| Protein: | UFD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 361 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UFD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..361] | [1..361] |
|
|
0.0 | [20..338] | [18..306] |
|
|
0.0 | [20..338] | [18..306] |
|
|
0.0 | [20..338] | [18..306] |
|
|
0.0 | [20..338] | [18..342] |
|
|
0.0 | [4..352] | [13..337] |
|
|
0.0 | [20..335] | [18..303] |
|
|
0.0 | [8..337] | [4..316] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MFSGFSSFGG GNGFVNMPQT FEEFFRCYPI AMMNDRIRKD DANFGGKIFL PPSALSKLSM 60
61 LNIRYPMLFK LTANETGRVT HGGVLEFIAE EGRVYLPQWM METLGIQPGS LLQISSTD
|
| Detection Method: |  |
| Confidence: | 13.19 |
| Match: | 1cz4A |
| Description: | N-terminal domain of VAT-N, VAT-Nn; C-terminal domain of VAT-N, VAT-Nc |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [119-210] |
1 11 21 31 41 51
| | | | | |
1 VPLGQFVKLE PQSVDFLDIS DPKAVLENVL RNFSTLTVDD VIEISYNGKT FKIKILEVKP 60
61 ESSSKSICVI ETDLVTDFAP PVGYVEPDYK AL
|
| Detection Method: | |
| Confidence: | 13.19 |
| Match: | 1cz4A |
| Description: | N-terminal domain of VAT-N, VAT-Nn; C-terminal domain of VAT-N, VAT-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-361] |
1 11 21 31 41 51
| | | | | |
1 KAQQDKEKKN SFGKGQVLDP SVLGQGSMST RIDYAGIANS SRNKLSKFVG QGQNISGKAP 60
61 KAEPKQDIKD MKITFDGEPA KLDLPEGQLF FGFPMVLPKE DEESAAGSKS SEQNFQGQGI 120
121 SLRKSNKRKT KSDHDSSKSK APKSPEVIEI D
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
