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View Structure Prediction Details

Protein: UFD1
Organism: Saccharomyces cerevisiae
Length: 361 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UFD1.

Description E-value Query
Range
Subject
Range
gi|151943330 - gi|151943330|gb|EDN61643.1| ubiquitin fusion degradation protein [Saccharomyces cerevisiae YJM789]
gi|190406927 - gi|190406927|gb|EDV10194.1| ubiquitin fusion degradation protein 1 [Saccharomyces cerevisiae RM11-1a...
gi|207345199 - gi|207345199|gb|EDZ72096.1| YGR048Wp-like protein [Saccharomyces cerevisiae AWRI1631]
UFD1 - Protein that interacts with Cdc48p and Npl4p, involved in recognition of polyubiquitinated proteins ...
UFD1_YEAST - Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=U...
0.0 [1..361] [1..361]
UFD1_MOUSE - Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=2
0.0 [20..338] [18..306]
UFD1_RAT - Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1
0.0 [20..338] [18..306]
gi|45383542, gi|... - gi|45383542|ref|NP_989632.1| ubiquitin fusion degradation 1-like [Gallus gallus], gi|15426003|gb|AAK...
0.0 [20..338] [18..306]
UFD1L - ubiquitin fusion degradation 1 like (yeast)
0.0 [20..338] [18..342]
UFD1_SCHPO - Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd...
ufd1 - Cdc48-Ufd1-Npl4 complex component Ufd1
0.0 [4..352] [13..337]
gi|10998388 - gi|10998388|gb|AAG25922.1|AF233524_1 ubiquitin fusion degradation 1-like protein [Xenopus laevis]
0.0 [20..335] [18..303]
gi|220954134, gi... - gi|220954134|gb|ACL89610.1| Ufd1-like-PA [synthetic construct], gi|220944186|gb|ACL84636.1| Ufd1-lik...
Ufd1-like-PA - The gene Ubiquitin fusion-degradation 1-like is referred to in FlyBase by the symbol Dmel\Ufd1-like ...
0.0 [8..337] [4..316]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSGFSSFGG GNGFVNMPQT FEEFFRCYPI AMMNDRIRKD DANFGGKIFL PPSALSKLSM  60
   61 LNIRYPMLFK LTANETGRVT HGGVLEFIAE EGRVYLPQWM METLGIQPGS LLQISSTD

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.19
Match: 1cz4A
Description: N-terminal domain of VAT-N, VAT-Nn; C-terminal domain of VAT-N, VAT-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [119-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPLGQFVKLE PQSVDFLDIS DPKAVLENVL RNFSTLTVDD VIEISYNGKT FKIKILEVKP  60
   61 ESSSKSICVI ETDLVTDFAP PVGYVEPDYK AL

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.19
Match: 1cz4A
Description: N-terminal domain of VAT-N, VAT-Nn; C-terminal domain of VAT-N, VAT-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [211-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAQQDKEKKN SFGKGQVLDP SVLGQGSMST RIDYAGIANS SRNKLSKFVG QGQNISGKAP  60
   61 KAEPKQDIKD MKITFDGEPA KLDLPEGQLF FGFPMVLPKE DEESAAGSKS SEQNFQGQGI 120
  121 SLRKSNKRKT KSDHDSSKSK APKSPEVIEI D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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