| Protein: | RME1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 300 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RME1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..299] | [195..485] |
|
|
0.0 | [2..296] | [396..683] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MSPCYGQNSA IAKGSWNREV LQEVQPIYHW HDFGQNMKEY SASPLEGDSS LPSSLPSSTE 60
61 DCLLLSLENT ITVIAGNQRQ AYDSTSSTEE GTAPQLRPDE IADSTHCITS LVDPEFRDLI 120
121 NYGRQKGANP VFIESNTTEQ SHSQCILGYP QKSHVAQLYH DPKVLSTISE GQ
|
| Detection Method: |  |
| Confidence: | 15.69897 |
| Match: | 1tf6A_ |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [173-251] |
1 11 21 31 41 51
| | | | | |
1 TKRGSYHCSH CSEKFATLVE FAAHLDEFNL ERPCKCPIEQ CPWKILGFQQ ATGLRRHCAS 60
61 QHIGELDIEM EKSLNLKVE
|
| Detection Method: | |
| Confidence: | 26.221849 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [252-300] |
1 11 21 31 41 51
| | | | | |
1 KYPGLNCPFP ICQKTFRRKD AYKRHVAMVH NNADSRFNKR LKKILNNTK
|
| Detection Method: | |
| Confidence: | 2.045757 |
| Match: | 1sp2__ |
| Description: | Transcription factor sp1 |
Matching Structure (courtesy of the PDB): |
|
