| Protein: | SEC15 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 910 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC15.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..910] | [1..910] |
|
|
0.0 | [30..884] | [33..806] |
|
|
0.0 | [21..724] | [32..700] |
|
|
0.0 | [62..884] | [14..753] |
|
|
0.0 | [41..884] | [29..766] |
|
|
0.0 | [62..878] | [30..767] |
|
|
0.0 | [47..868] | [8..743] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MDQEGQPLLS KDFQQVLLAT ASGNNSSWTE RAVLNNESTD AVKHEPALGQ NDVFDLDPLS 60
61 FDKWVPFLRR ALDKNQ
|
| Detection Method: |  |
| Confidence: | 7.11 |
| Match: | 1ddbA |
| Description: | Proapoptotic molecule Bid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [77-291] |
1 11 21 31 41 51
| | | | | |
1 LDPVIDELEN SIEDNFQGLE LQLLQDSQMN DKLETSIDEI ANIQGMVQDT LSSEISKFQI 60
61 RLSESANELI VKKQMYVNNK KISLKISEAT ILITKVVRIL ELSSKCQELI TERKFFKVLQ 120
121 NLDSLEKLYL QEFKNYNFQF LIEIYNSIPF LQKVTKDECI NLIRNSLNLN LGKNLIKVGQ 180
181 EFVAIYENEL LPQWLETRSK MKLTNFKFNS PIEIS
|
| Detection Method: | |
| Confidence: | 8.45 |
| Match: | 1av1A |
| Description: | Apolipoprotein A-I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [292-379] |
1 11 21 31 41 51
| | | | | |
1 MRDESFLAKL NLGEFFQLDD FHDSIMIFQN LNELSVLSGE FNKEYELRKT KLMYPLIWKK 60
61 NKTAAYQMDS LLRGTGTTPG STAHDVST
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [380-550] |
1 11 21 31 41 51
| | | | | |
1 DDPFTQSLSL HFLQDYFLKI LGFLLYDINL NKATEFILVD NNYNSTNEFW DGLMDRLSPY 60
61 LSYFIDEKLK TEEDMIKLKD FLCIYVAILE NFKLNIEPLY KILVSIFEKF CSVSLRAFDD 120
121 EFQILLNDDD FMPLSINDKT LYEKVLKICW MKEGEHLSLP DPTNGEPFAV T
|
|
Region B: Residues: [624-667] |
1 11 21 31 41 51
| | | | | |
1 NLDYFIIAAK EFSNFMTREN ILQNPDMEIR LSSIKYLAES RKLA
|
|
Region C: Residues: [721-730] |
1 11 21 31 41 51
| | | | | |
1 LPYSVQTLLI
|
| Detection Method: | |
| Confidence: | 7.65 |
| Match: | 1b8fA |
| Description: | Histidine ammonia-lyase (HAL) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [551-623] |
1 11 21 31 41 51
| | | | | |
1 LPFSPLYPMT CTLAKKTYSK ITAFLSIFYR HELHTLNNIL VKTMDDIFND IVNKKIRSKL 60
61 ESTSREEIAQ ILV
|
|
Region B: Residues: [668-720] |
1 11 21 31 41 51
| | | | | |
1 ETKLIELIDS KISDILETIE IDWQITEVRQ DPDISIIDLA QFLEMMFAST LQN
|
|
Region C: Residues: [731-775] |
1 11 21 31 41 51
| | | | | |
1 FREFDSLTRQ FMGLLLHDTP STITHESIMN FEVDVNYLES IIPRI
|
| Detection Method: | |
| Confidence: | 7.65 |
| Match: | 1b8fA |
| Description: | Histidine ammonia-lyase (HAL) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [776-910] |
1 11 21 31 41 51
| | | | | |
1 FPSTPGTIDS NGYQSPMTPS TPTFPNANGV DAPTLFENNI KSLEATFMEL KQCIELLKTQ 60
61 GKDYNEPEIR LRKYSRIRQE DAALLLSKIQ HFVSSVEGAN GDDTSVMDSS SIFNSESASV 120
121 IDSNTSRIAK FFNRR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
