| Protein: | SEC15 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 910 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC15.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..910] | [1..910] |
|
|
0.0 | [30..884] | [33..806] |
|
|
0.0 | [21..724] | [32..700] |
|
|
0.0 | [62..884] | [14..753] |
|
|
0.0 | [41..884] | [29..766] |
|
|
0.0 | [62..878] | [30..767] |
|
|
0.0 | [47..868] | [8..743] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MDQEGQPLLS KDFQQVLLAT ASGNNSSWTE RAVLNNESTD AVKHEPALGQ NDVFDLDPLS 60
61 FDKWVPFLRR ALDKNQ
|
| Detection Method: |  |
| Confidence: | 7.11 |
| Match: | 1ddbA |
| Description: | Proapoptotic molecule Bid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [77-291] |
1 11 21 31 41 51
| | | | | |
1 LDPVIDELEN SIEDNFQGLE LQLLQDSQMN DKLETSIDEI ANIQGMVQDT LSSEISKFQI 60
61 RLSESANELI VKKQMYVNNK KISLKISEAT ILITKVVRIL ELSSKCQELI TERKFFKVLQ 120
121 NLDSLEKLYL QEFKNYNFQF LIEIYNSIPF LQKVTKDECI NLIRNSLNLN LGKNLIKVGQ 180
181 EFVAIYENEL LPQWLETRSK MKLTNFKFNS PIEIS
|
| Detection Method: | |
| Confidence: | 8.45 |
| Match: | 1av1A |
| Description: | Apolipoprotein A-I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [292-379] |
1 11 21 31 41 51
| | | | | |
1 MRDESFLAKL NLGEFFQLDD FHDSIMIFQN LNELSVLSGE FNKEYELRKT KLMYPLIWKK 60
61 NKTAAYQMDS LLRGTGTTPG STAHDVST
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.544 | a.118.1 | ARM repeat |
| View | Download | 0.562 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.521 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.607 | a.59.1 | PAH2 domain |
| View | Download | 0.374 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.368 | a.77.1 | DEATH domain |
| View | Download | 0.337 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.335 | c.47.1 | Thioredoxin-like |
| View | Download | 0.285 | c.45.1 | (Phosphotyrosine protein) phosphatases II |
| View | Download | 0.267 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.261 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.234 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.220 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.215 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.202 | d.15.6 | Superantigen toxins, C-terminal domain |
|
Region A: Residues: [380-550] |
1 11 21 31 41 51
| | | | | |
1 DDPFTQSLSL HFLQDYFLKI LGFLLYDINL NKATEFILVD NNYNSTNEFW DGLMDRLSPY 60
61 LSYFIDEKLK TEEDMIKLKD FLCIYVAILE NFKLNIEPLY KILVSIFEKF CSVSLRAFDD 120
121 EFQILLNDDD FMPLSINDKT LYEKVLKICW MKEGEHLSLP DPTNGEPFAV T
|
|
Region B: Residues: [624-667] |
1 11 21 31 41 51
| | | | | |
1 NLDYFIIAAK EFSNFMTREN ILQNPDMEIR LSSIKYLAES RKLA
|
|
Region C: Residues: [721-730] |
1 11 21 31 41 51
| | | | | |
1 LPYSVQTLLI
|
| Detection Method: | |
| Confidence: | 7.65 |
| Match: | 1b8fA |
| Description: | Histidine ammonia-lyase (HAL) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [551-623] |
1 11 21 31 41 51
| | | | | |
1 LPFSPLYPMT CTLAKKTYSK ITAFLSIFYR HELHTLNNIL VKTMDDIFND IVNKKIRSKL 60
61 ESTSREEIAQ ILV
|
|
Region B: Residues: [668-720] |
1 11 21 31 41 51
| | | | | |
1 ETKLIELIDS KISDILETIE IDWQITEVRQ DPDISIIDLA QFLEMMFAST LQN
|
|
Region C: Residues: [731-775] |
1 11 21 31 41 51
| | | | | |
1 FREFDSLTRQ FMGLLLHDTP STITHESIMN FEVDVNYLES IIPRI
|
| Detection Method: | |
| Confidence: | 7.65 |
| Match: | 1b8fA |
| Description: | Histidine ammonia-lyase (HAL) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [776-910] |
1 11 21 31 41 51
| | | | | |
1 FPSTPGTIDS NGYQSPMTPS TPTFPNANGV DAPTLFENNI KSLEATFMEL KQCIELLKTQ 60
61 GKDYNEPEIR LRKYSRIRQE DAALLLSKIQ HFVSSVEGAN GDDTSVMDSS SIFNSESASV 120
121 IDSNTSRIAK FFNRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.363 | a.1.1 | Globin-like |
| View | Download | 0.425 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.318 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.289 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.416 | a.185.1 | Gametocyte protein Pfg27 |
| View | Download | 0.264 | f.1.5 | Exotoxin A, middle domain |
| View | Download | 0.230 | a.4.1 | Homeodomain-like |
