Protein: | CHC1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1653 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHC1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1637] | [1..1632] |
|
0.0 | [4..1620] | [5..1614] |
|
0.0 | [2..1272] | [4..1280] |
|
0.0 | [4..1632] | [5..1628] |
|
0.0 | [4..1650] | [5..1652] |
|
0.0 | [1..1653] | [1..1653] |
|
0.0 | [4..1648] | [5..1647] |
Region A: Residues: [1-12] |
1 11 21 31 41 51 | | | | | | 1 MSDLPIEFTE LV |
Region B: Residues: [199-362] |
1 11 21 31 41 51 | | | | | | 1 GHVAIFTNIL LEGNGSTPVQ VFVTGNRNAT TGAGELRIIE IDHDASLPSQ YQKETTDIFF 60 61 PPDATNDFPI AVQVSEKYGI IYLLTKYGFI HLYELETGTN LFVNRITAES VFTAAPYNHE 120 121 NGIACINKKG QVLAVEISTS QIVPYILNKL SNVALALIVA TRGG |
Detection Method: | ![]() |
Confidence: | 2230.0 |
Match: | 1bpoA_ |
Description: | Clathrin heavy-chain linker domain; Clathrin heavy-chain terminal domain |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [13-144] |
1 11 21 31 41 51 | | | | | | 1 DLMSLGISPQ FLDFRSTTFE SDHFVTVRET KDGTNSVAIV DLAKGNEVTR KNMGGDSAIM 60 61 HPSQMVISVR ANGTIVQIFN LETKSKLKSF TLDEPVIFWR WLSETTLGFV TARSILTSNV 120 121 FDGNVNAKPQ LL |
Region B: Residues: [363-430] |
1 11 21 31 41 51 | | | | | | 1 LPGADDLFQK QFESLLLQND YQNAAKVAAS STSLRNQNTI NRLKNIQAPP GAISPILLYF 60 61 STLLDKGK |
Detection Method: | ![]() |
Confidence: | 2230.0 |
Match: | 1bpoA_ |
Description: | Clathrin heavy-chain linker domain; Clathrin heavy-chain terminal domain |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [145-198] |
1 11 21 31 41 51 | | | | | | 1 TLRHANLNNT QIINFVANKN LDWFAVVGIL QENGRIAGRI QLFSKQRNIS QAID |
Region B: Residues: [431-498] |
1 11 21 31 41 51 | | | | | | 1 LNKEETIELA RPVLQQDRKQ LFEKWLKEDK LECSEELGDI VKPFDTTLAL ACYLRAGAHA 60 61 KVISCLAE |
Detection Method: | ![]() |
Confidence: | 2230.0 |
Match: | 1bpoA_ |
Description: | Clathrin heavy-chain linker domain; Clathrin heavy-chain terminal domain |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [499-561] |
1 11 21 31 41 51 | | | | | | 1 LQQFEKIIPY CQKVGYQPNF LVLISSLIRS SPDRASEFAV SLLQNPETAS QIDIEKIADL 60 61 FFS |
Detection Method: | ![]() |
Confidence: | 12.01 |
Match: | 1m9iA |
Description: | Annexin VI |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [562-806] |
1 11 21 31 41 51 | | | | | | 1 QNHIQQGTSL LLDALKGDTP DQGHLQTRVL EVNLLHAPQV ADAILGNNIF SHYDKPTIAS 60 61 LSEKAGLYQR ALENYTDIKD IKRCVVHTNA LPIDWLVGYF GKLNVEQSLA CLKALMDNNI 120 121 QANIQTVVQV ATKFSDLIGP STLIKLFEDY NATEGLYYYL ASLVNLTEDK DVVYKYIEAA 180 181 AKMKQYREIE RIVKDNNVYD PERVKNFLKD ANLEDQLPLV IVCDRFDFVH EMILYLYKSQ 240 241 NLKFI |
Detection Method: | ![]() |
Confidence: | 12.01 |
Match: | 1m9iA |
Description: | Annexin VI |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [807-822] |
1 11 21 31 41 51 | | | | | | 1 ETYVQQVNPS KTAQVV |
Region B: Residues: [894-1077] |
1 11 21 31 41 51 | | | | | | 1 NSPEKFLKEN DQYDTLDVGH YCEKRDPYLA YIAYEKGQND DDLIRITNEN SMYKYQARYL 60 61 LERSDLDLWN KVLNQENIHR RQLIDSVISV GIPELTDPEP VSLTVQAFMT NGLKLELIEL 120 121 LEKIILEPSP FNENVALQGL LLLSAIKYEP TKVSSYIEKL DNYDADEIAP LCIEHDLKEE 180 181 AFEI |
Detection Method: | ![]() |
Confidence: | 12.01 |
Match: | 1m9iA |
Description: | Annexin VI |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [823-893] |
1 11 21 31 41 51 | | | | | | 1 GALLDMDCDE AFIQSLLQSV LGQVPINELT TEVEKRNRLK ILLPFLEQSL SQGIQDQAVY 60 61 NALAKIYIDS N |
Detection Method: | ![]() |
Confidence: | 12.01 |
Match: | 1m9iA |
Description: | Annexin VI |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [1078-1550] |
1 11 21 31 41 51 | | | | | | 1 YDKHEMYGKA LKVLIEDIMS LDRAASYADK INTPELWSQI GTAQLDGLRI PDAIESYIKA 60 61 EDPSNYENVI DIAEQAGKYE ELIPFLLMAR KTLKEPKIDG ALILAYAELN KIHEIENLLA 120 121 GSNVANLDHV GDKLFENKEY KAARLCYSAV SNYSKLASTL VYLGDYQAAV DTARKASNIK 180 181 VWKLVNDACI EKKEFKLAQI CGLNLIVHAE ELDELVERYE SNGYFEELIS LFEAGLGLER 240 241 AHMGMFTELA ILYSKYEPDK TFEHLKLFWS RINIPKVIRA VEQAHLWSEL VFLYAHYDEW 300 301 DNAALTLIEK STKDLDHAYF KEVVVKVSNL EIYYKAINFY VKFHPSLLVD LLTSLTPRLD 360 361 IPRTVKIFSK SDNLPLIKPF LINVLPKNNS VVNQAYHDLM IEEEDYKALQ DAVDSYDKFD 420 421 QLGLASRLES HKLIFFKKIG ALLYRRNKKW AKSLSILKEE KLWKDAIETA AIS |
Detection Method: | ![]() |
Confidence: | 2330.0 |
Match: | 1b89A_ |
Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [1551-1653] |
1 11 21 31 41 51 | | | | | | 1 QDPKVVEALL TYFVETGNRE GFVALLYAAY NLVRIEFVLE ISWMNSLEDY IKPFEISIKK 60 61 EQNDSIKKIT EELAKKSGSN EEHKDGQPLM LMNSAMNVQP TGF |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.843 | 0.106 | structural molecule activity | d.55.1 | Ribosomal protein L22 |