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View Structure Prediction Details

Protein: COX4
Organism: Saccharomyces cerevisiae
Length: 155 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX4.

Description E-value Query
Range
Subject
Range
COX4_YEAST - Cytochrome c oxidase subunit 4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...
gi|190407127 - gi|190407127|gb|EDV10394.1| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae RM11-1a]
gi|151943629 - gi|151943629|gb|EDN61939.1| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae YJM789]
COX4 - Subunit IV of cytochrome c oxidase, the terminal member of the mitochondrial inner membrane electron...
5.0E-67 [1..155] [1..155]
COX4_SCHPO - Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...
cox4 - cytochrome c oxidase subunit IV
1.0E-52 [26..155] [35..164]
COX5B_MOUSE - Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus GN=Cox5b PE=1 SV=1
3.0E-41 [19..145] [1..123]
COX5B_BOVIN, COX... - (P00428) Cytochrome c oxidase polypeptide Vb (EC 1.9.3.1) (VI), (P00428) Cytochrome c oxidase polype...
4.0E-39 [51..145] [1..93]
COX5B_RAT - Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus GN=Cox5b PE=1 SV=2
6.0E-39 [19..145] [1..124]
gi|60656153, gi|... - gi|60656153|gb|AAX32640.1| cytochrome c oxidase subunit Vb [synthetic construct], gi|208966106|dbj|B...
COX5B - cytochrome c oxidase subunit Vb
3.0E-38 [33..145] [13..124]

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Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLRQSIRF FKPATRTLCS SRYLLQQKPV VKTAQNLAEV NGPETLIGPG AKEGTVPTDL  60
   61 DQETGLARLE LLGKLEGIDV FDTKPLDSSR KGTMKDPIII ESYDDYRYVG CTGSPAGSHT 120
  121 IMWLKPTVNE VARCWECGSV YKLNPVGVPN DDHHH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 120.156545
Match: 1occF_
Description: Cytochrome c oxidase Subunit F
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [77-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIDVFDTKPL DSSRKGTMKD PIIIESYDDY RYVGCTGSPA GSHTIMWLKP TVNEVARCWE  60
   61 CGSVYKLNPV GVPNDDHHH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 2odxA
Description: No description for 2odxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle