| Protein: | CDC43 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 376 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC43.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..376] | [1..376] |
|
|
0.0 | [5..369] | [12..322] |
|
|
4.0E-96 | [5..369] | [20..330] |
|
|
1.0E-91 | [10..356] | [19..336] |
|
|
4.0E-91 | [10..356] | [19..336] |
|
|
3.0E-89 | [7..361] | [30..363] |
|
|
6.0E-89 | [15..369] | [33..336] |
|
Region A: Residues: [1-19] |
1 11 21 31 41 51
| | | | | |
1 MCQATNGPSR VVTKKHRKF
|
|
Region B: Residues: [198-376] |
1 11 21 31 41 51
| | | | | |
1 YIMSQQCYNG AFGAHNEPHS GYTSCALSTL ALLSSLEKLS DKFKEDTITW LLHRQVSSHG 60
61 CMKFESELNA SYDQSDDGGF QGRENKFADT CYAFWCLNSL HLLTKDWKML CQTELVTNYL 120
121 LDRTQKTLTG GFSKNDEEDA DLYHSCLGSA ALALIEGKFN GELCIPQEIF NDFSKRCCF
|
| Detection Method: |  |
| Confidence: | 232.54902 |
| Match: | 1dceB_ |
| Description: | Rab geranylgeranyltransferase, beta subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein prenyltransferase activity | 13.7736019666673 | bayes_pls_golite062009 |
| protein geranylgeranyltransferase activity | 12.9757276506747 | bayes_pls_golite062009 |
| Rab geranylgeranyltransferase activity | 12.8088011327065 | bayes_pls_golite062009 |
| prenyltransferase activity | 11.6786310564018 | bayes_pls_golite062009 |
| CAAX-protein geranylgeranyltransferase activity | 10.5569796788906 | bayes_pls_golite062009 |
| protein farnesyltransferase activity | 4.15546866363415 | bayes_pls_golite062009 |
| binding | 1.68564752993879 | bayes_pls_golite062009 |
| transferase activity | 1.0950430724883 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.854896924803117 | bayes_pls_golite062009 |
| catalytic activity | 0.497699107100544 | bayes_pls_golite062009 |
| protein binding | 0.404098609552806 | bayes_pls_golite062009 |
|
Region A: Residues: [20-197] |
1 11 21 31 41 51
| | | | | |
1 FERHLQLLPS SHQGHDVNRM AIIFYSISGL SIFDVNVSAK YGDHLGWMRK HYIKTVLDDT 60
61 ENTVISGFVG SLVMNIPHAT TINLPNTLFA LLSMIMLRDY EYFETILDKR SLARFVSKCQ 120
121 RPDRGSFVSC LDYKTNCGSS VDSDDLRFCY IAVAILYICG CRSKEDFDEY IDTEKLLG
|
| Detection Method: | |
| Confidence: | 232.54902 |
| Match: | 1dceB_ |
| Description: | Rab geranylgeranyltransferase, beta subunit |
| Matching Structure (courtesy of the PDB): |
|
