| Protein: | INO80 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1489 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INO80.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [296..1488] | [132..1293] |
|
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0.0 | [267..1488] | [47..1341] |
|
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0.0 | [163..1486] | [2..1264] |
|
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0.0 | [53..1481] | [3..1433] |
|
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0.0 | [282..1261] | [345..1324] |
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0.0 | [282..1185] | [346..1245] |
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0.0 | [282..1185] | [346..1245] |
|
Region A: Residues: [1-420] |
1 11 21 31 41 51
| | | | | |
1 MSLAVLLNKE DKDISDFSKT TAGKSAKKNS RERVADVAPT RVLDKKQAYL SQLNSEFNRI 60
61 KRRDSIEQLY QDWKFINLQE FELISEWNQQ SKDWQFDNTN DSQDLHFKKL YRDMSMINKE 120
121 WAEYQSFKNA NLSDIINEKD ADEDEEDDED ELEDGEEDME EDEASTGRHT NGKSMRGNGI 180
181 QKSRKKDAAA AAAIGKAIKD DQTHADTVVT VNGDENEDGN NGEDEDNDND NENNNDNDND 240
241 NENENDNDSD NDDEEENGEE DEEEEEIEDL DEEDFAAFEE QDDNDDEDFN PDVEKRRKRS 300
301 SSSSSSTKLS MNSLSLITSK KINKNITINS DRPKIVRELI KMCNKNKHQK IKKRRFTNCI 360
361 VTDYNPIDSK LNIKITLKQY HVKRLKKLIN DAKREREREE ALKNNVGLDG NDLDNDEDGS 420
421
|
| Detection Method: |  |
| Confidence: | 4.154902 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [421-637] |
1 11 21 31 41 51
| | | | | |
1 ESHKRRKLNN NTANGADDAN KRKFNTRHGL PTYGMKMNAK EARAIQRHYD NTYTTIWKDM 60
61 ARKDSTKMSR LVQQIQSIRS TNFRKTSSLC AREAKKWQSK NFKQIKDFQT RARRGIREMS 120
121 NFWKKNEREE RDLKKKIEKE AMEQAKKEEE EKESKRQAKK LNFLLTQTEL YSHFIGRKIK 180
181 TNELEGNNVS SNDSESQKNI DISALAPNKN DFHAIDF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [638-956] |
1 11 21 31 41 51
| | | | | |
1 DNENDEQLRL RAAENASNAL AETRAKAKQF DDHANAHEEE EEEDELNFQN PTSLGEITIE 60
61 QPKILACTLK EYQLKGLNWL ANLYDQGING ILADEMGLGK TVQSISVLAH LAENHNIWGP 120
121 FLVVTPASTL HNWVNEISKF LPQFKILPYW GNANDRKVLR KFWDRKNLRY NKNAPFHVMV 180
181 TSYQMVVTDA NYLQKMKWQY MILDEAQAIK SSQSSRWKNL LSFHCRNRLL LTGTPIQNSM 240
241 QELWALLHFI MPSLFDSHDE FNEWFSKDIE SHAEANTKLN QQQLRRLHMI LKPFMLRRVK 300
301 KNVQSELGDK IEIDVLCDL
|
| Detection Method: | |
| Confidence: | 14.8 |
| Match: | 1gm5A |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [957-1182] |
1 11 21 31 41 51
| | | | | |
1 TQRQAKLYQV LKSQISTNYD AIENAATNDS TSNSASNSGS DQNLINAVMQ FRKVCNHPDL 60
61 FERADVDSPF SFTTFGKTTS MLTASVANNN SSVISNSNMN LSSMSSNNIS NGKFTDLIYS 120
121 SRNPIKYSLP RLIYEDLILP NYNNDVDIAN KLKNVKFNIF NPSTNYELCL FLSKLTGEPS 180
181 LNEFFRVSTT PLLKRVIERT NGPKNTDSLS FKTITQELLE VTRNAP
|
| Detection Method: | |
| Confidence: | 14.8 |
| Match: | 1gm5A |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.470983068319171 | bayes_pls_golite062009 |
| hydrolase activity | 0.0582794297634999 | bayes_pls_golite062009 |
|
Region A: Residues: [1183-1414] |
1 11 21 31 41 51
| | | | | |
1 SEGVMASLLN VEKHAYEREY LNCIQRGYHP NVSAPPVTIE VLGSSHVTNS INNELFDPLI 60
61 SQALSDIPAI TQYNMHVKKG IPVEDFPKTG LFPEPLNKNF SSNISMPSMD RFITESAKLR 120
121 KLDELLVKLK SEGHRVLIYF QMTKMMDLME EYLTYRQYNH IRLDGSSKLE DRRDLVHDWQ 180
181 TNPEIFVFLL STRAGGLGIN LTAADTVIFY DSDWNPTIDS QAMDRAHRLG QT
|
| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1415-1489] |
1 11 21 31 41 51
| | | | | |
1 RQVTVYRLLV RGTIEERMRD RAKQKEQVQQ VVMEGKTQEK NIKTIEVGEN DSEVTREGSK 60
61 SISQDGIKEA ASALA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.486 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.566 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.513 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.671 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.488 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.439 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.433 | a.24.4 | Hemerythrin |
| View | Download | 0.398 | d.68.4 | YhbY-like |
| View | Download | 0.374 | a.74.1 | Cyclin-like |
| View | Download | 0.363 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.342 | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.336 | d.68.3 | SirA-like |
| View | Download | 0.326 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.313 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.297 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.289 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.287 | d.226.1 | GIY-YIG endonuclease |
| View | Download | 0.284 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.281 | c.66.1 | S-adenosyl-L-methionine-dependent methyltransferases |
| View | Download | 0.272 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.262 | c.16.1 | Lumazine synthase |
| View | Download | 0.256 | d.88.1 | SRF-like |
| View | Download | 0.247 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.235 | d.88.1 | SRF-like |
| View | Download | 0.229 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.219 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.215 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.214 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.212 | c.55.4 | Translational machinery components |
| View | Download | 0.211 | c.55.4 | Translational machinery components |
| View | Download | 0.208 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.206 | c.16.1 | Lumazine synthase |
| View | Download | 0.203 | d.79.1 | YjgF-like |
