| Protein: | TIP20 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 701 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIP20.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..701] | [1..701] |
|
|
0.001 | [8..143] | [1332..1468] |
|
|
0.001 | [8..143] | [1332..1468] |
|
|
0.002 | [8..143] | [1332..1468] |
|
|
0.003 | [6..152] | [218..361] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MNGIDDLLNI NDRIKQVQNE RNELASKLQN LKQSLASNDT EVALSEVIAQ DIIEVGASVE 60
61 GLEQLRAKYG DLQILNKLEK VAVQQTQMQA GVDKLDSFER QLDELAEQPP DQFTLDDVKA 120
121 LHSKLTSVFA TVPQINNIDS QYAAYNKLKS KVTGKYNDVI IQRL
|
|
Region B: Residues: [190-246] |
1 11 21 31 41 51
| | | | | |
1 SVGLVKCLRE NSTKLYQLSL LYLPLEEETQ NGDSERPLSR SNNNQEPVLW NFKSLAN
|
| Detection Method: |  |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.22504663904848 | bayes_pls_golite062009 |
| binding | 2.04447608076272 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.88229294781644 | bayes_pls_golite062009 |
| actin binding | 0.92731255372235 | bayes_pls_golite062009 |
| actin filament binding | 0.847123006562293 | bayes_pls_golite062009 |
| SNARE binding | 0.309596137075689 | bayes_pls_golite062009 |
| syntaxin binding | 0.214277649172074 | bayes_pls_golite062009 |
| protein complex binding | 0.0466251755500114 | bayes_pls_golite062009 |
|
Region A: Residues: [165-189] |
1 11 21 31 41 51
| | | | | |
1 ATNWSNTFDQ KLLEAQWDTQ KFAST
|
|
Region B: Residues: [247-339] |
1 11 21 31 41 51
| | | | | |
1 NFNVRFTYHF HATSSSSKIE TYFQFLNDYL AENLYKCINI FHDDCNGLTK PVIHEQFINY 60
61 VLQPIRDKVR STLFQNDLKT LIVLISQILA TDK
|
| Detection Method: | |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [340-432] |
1 11 21 31 41 51
| | | | | |
1 NLLNSFHYHG LGLVSLISDE VWEKWINYEV EMANRQFINI TKNPEDFPKS SQNFVKLINK 60
61 IYDYLEPFYD LDFDLLVRYK LMTCSLIFMN LTS
|
| Detection Method: | |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-630] |
1 11 21 31 41 51
| | | | | |
1 SYLDYILTVD SLNETRTKEQ ELYQTMAKLQ HVNFVYRKIK SLSSNFIFIQ LTDIVNSTES 60
61 KKYNSLFQNV ENDYEKAMST DMQNSIVHRI QKLLKETLRN YFKISTWSTL EMSVDENIGP 120
121 SSVPSAELVN SINVLRRLIN KLDSMDIPLA ISLKVKNELL NVIVNYFTES ILKLNKFNQN 180
181 GLNQFLHDFK SLSSILSL
|
| Detection Method: | |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [631-701] |
1 11 21 31 41 51
| | | | | |
1 PSHATNYKCM SLHELVKILK LKYDPNNQQF LNPEYIKTGN FTSLKEAYSI KYLKDTKIQD 60
61 ALYRIIYGNI L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
