| Protein: | TIP20 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 701 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIP20.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..701] | [1..701] |
|
|
0.001 | [8..143] | [1332..1468] |
|
|
0.001 | [8..143] | [1332..1468] |
|
|
0.002 | [8..143] | [1332..1468] |
|
|
0.003 | [6..152] | [218..361] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MNGIDDLLNI NDRIKQVQNE RNELASKLQN LKQSLASNDT EVALSEVIAQ DIIEVGASVE 60
61 GLEQLRAKYG DLQILNKLEK VAVQQTQMQA GVDKLDSFER QLDELAEQPP DQFTLDDVKA 120
121 LHSKLTSVFA TVPQINNIDS QYAAYNKLKS KVTGKYNDVI IQRL
|
|
Region B: Residues: [190-246] |
1 11 21 31 41 51
| | | | | |
1 SVGLVKCLRE NSTKLYQLSL LYLPLEEETQ NGDSERPLSR SNNNQEPVLW NFKSLAN
|
| Detection Method: |  |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.22504663904848 | bayes_pls_golite062009 |
| binding | 2.04447608076272 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.88229294781644 | bayes_pls_golite062009 |
| actin binding | 0.92731255372235 | bayes_pls_golite062009 |
| actin filament binding | 0.847123006562293 | bayes_pls_golite062009 |
| SNARE binding | 0.309596137075689 | bayes_pls_golite062009 |
| syntaxin binding | 0.214277649172074 | bayes_pls_golite062009 |
| protein complex binding | 0.0466251755500114 | bayes_pls_golite062009 |
|
Region A: Residues: [165-189] |
1 11 21 31 41 51
| | | | | |
1 ATNWSNTFDQ KLLEAQWDTQ KFAST
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|
Region B: Residues: [247-339] |
1 11 21 31 41 51
| | | | | |
1 NFNVRFTYHF HATSSSSKIE TYFQFLNDYL AENLYKCINI FHDDCNGLTK PVIHEQFINY 60
61 VLQPIRDKVR STLFQNDLKT LIVLISQILA TDK
|
| Detection Method: | |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [340-432] |
1 11 21 31 41 51
| | | | | |
1 NLLNSFHYHG LGLVSLISDE VWEKWINYEV EMANRQFINI TKNPEDFPKS SQNFVKLINK 60
61 IYDYLEPFYD LDFDLLVRYK LMTCSLIFMN LTS
|
| Detection Method: | |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-630] |
1 11 21 31 41 51
| | | | | |
1 SYLDYILTVD SLNETRTKEQ ELYQTMAKLQ HVNFVYRKIK SLSSNFIFIQ LTDIVNSTES 60
61 KKYNSLFQNV ENDYEKAMST DMQNSIVHRI QKLLKETLRN YFKISTWSTL EMSVDENIGP 120
121 SSVPSAELVN SINVLRRLIN KLDSMDIPLA ISLKVKNELL NVIVNYFTES ILKLNKFNQN 180
181 GLNQFLHDFK SLSSILSL
|
| Detection Method: | |
| Confidence: | 7.53 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [631-701] |
1 11 21 31 41 51
| | | | | |
1 PSHATNYKCM SLHELVKILK LKYDPNNQQF LNPEYIKTGN FTSLKEAYSI KYLKDTKIQD 60
61 ALYRIIYGNI L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.628 | a.39.1 | EF-hand |
| View | Download | 0.490 | c.47.1 | Thioredoxin-like |
| View | Download | 0.695 | a.4.1 | Homeodomain-like |
| View | Download | 0.522 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.469 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.456 | a.3.1 | Cytochrome c |
| View | Download | 0.456 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.455 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.451 | a.28.1 | ACP-like |
| View | Download | 0.450 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.432 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.409 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.404 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.404 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.394 | a.4.1 | Homeodomain-like |
| View | Download | 0.387 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.387 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.386 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.386 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.376 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.372 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.370 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.335 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.332 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.323 | d.75.1 | tRNA splicing endonuclease EdnA, N-terminal domain |
| View | Download | 0.322 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.305 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.304 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.304 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.301 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.293 | a.28.1 | ACP-like |
| View | Download | 0.291 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.279 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.273 | a.60.8 | HRDC-like |
| View | Download | 0.272 | d.58.17 | Metal-binding domain |
| View | Download | 0.267 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.261 | a.77.1 | DEATH domain |
| View | Download | 0.253 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.251 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.249 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.247 | a.4.1 | Homeodomain-like |
| View | Download | 0.238 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.227 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.222 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.215 | a.39.1 | EF-hand |
| View | Download | 0.211 | c.47.1 | Thioredoxin-like |
| View | Download | 0.209 | a.130.1 | Chorismate mutase II |
