| Protein: | SDS23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 527 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDS23.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-78 | [1..527] | [1..527] |
|
|
7.0E-51 | [70..434] | [413..753] |
|
|
8.0E-50 | [5..414] | [153..565] |
|
|
1.0E-47 | [5..391] | [23..379] |
|
|
3.0E-47 | [7..411] | [5..363] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MPQNTRHTSI VEMLSTPPQL PNSTDLNSLS EQTDKNTEAN KSDTESLHKS ISKSSSSSSL 60
61 STLDNTEYSN NNGNSLSTLN SQNLLSVHRQ EW
|
|
Region B: Residues: [235-466] |
1 11 21 31 41 51
| | | | | |
1 KYLWENARSF PNLKPLLDSS LEELNIGVLN AARDKPTFKQ SRVISIQGDE HLIMALHKMY 60
61 VERISSIAVV DPQGNLIGNI SVTDVKHVTR TSQYPLLHNT CRHFVSVILN LRGLETGKDS 120
121 FPIFHVYPTS SLARTFAKLV ATKSHRLWIV QPNDNQPTAS SEKSSSPSPS TPPVTTLPSL 180
181 ASSYHSNTQS SRMANSPVLK SSDTSNNKIN VNINLSGPSP SQPQSPSATM PP
|
| Detection Method: |  |
| Confidence: | 41.09691 |
| Match: | 1zfjA_ |
| Description: | Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [93-234] |
1 11 21 31 41 51
| | | | | |
1 QHTPLSNLVE QNKLIFIRGS ISVEEAFNTL VKHQLTSLPV ENFPGDMNCL TFDYNDLNAY 60
61 LLLVLNRIKV SNDKITSDCQ NGKSVPVAEI VKLTPKNPFY KLPETENLST VIGILGSGVH 120
121 RVAITNVEMT QIKGILSQRR LI
|
| Detection Method: | |
| Confidence: | 41.09691 |
| Match: | 1zfjA_ |
| Description: | Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [467-527] |
1 11 21 31 41 51
| | | | | |
1 PQSPSNCPAS PTPAHFEKEY RTGKLIGVVS LTDILSVLAR KQTHHKEIDP QMARKQRGHI 60
61 G
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.439 | a.4.1 | Homeodomain-like |
| View | Download | 0.320 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.350 | a.3.1 | Cytochrome c |
| View | Download | 0.381 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.306 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.292 | a.4.1 | Homeodomain-like |
| View | Download | 0.289 | a.3.1 | Cytochrome c |
| View | Download | 0.285 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.275 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.273 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.272 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.261 | a.3.1 | Cytochrome c |
| View | Download | 0.245 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.235 | a.3.1 | Cytochrome c |
| View | Download | 0.222 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.222 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.215 | a.4.1 | Homeodomain-like |
| View | Download | 0.211 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.207 | a.28.1 | ACP-like |
| View | Download | 0.203 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
