| Protein: | ATG18 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 500 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG18.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..499] | [903..1413] |
|
|
0.0 | [1..499] | [827..1296] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MSDSSPTINF INFNQTGTCI SLGTSKGFKI FNCEPFGKFY SEDSGGYAIV EMLFSTSLLA 60
61 LVGIGDQPAL SPRRLRIIN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.913 | 0.006 | protein targeting to vacuole | b.1.14 | Invasin/intimin cell-adhesion fragments |
|
Region A: Residues: [80-131] |
1 11 21 31 41 51
| | | | | |
1 TKKHSIICEV TFPTSILSVK MNKSRLVVLL QEQIYIYDIN TMRLLHTIET NP
|
| Detection Method: | |
| Confidence: | 64.69897 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.8484919978091 | bayes_pls_golite062009 |
| protein binding | 1.42618832381942 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| nucleic acid binding | 0.624115832843391 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.479978536094414 | bayes_pls_golite062009 |
| hydrolase activity | 0.36638536879917 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.359536347486199 | bayes_pls_golite062009 |
| signal transducer activity | 0.343972561304413 | bayes_pls_golite062009 |
| molecular transducer activity | 0.343972561304413 | bayes_pls_golite062009 |
| transcription regulator activity | 0.282387003961579 | bayes_pls_golite062009 |
|
Region A: Residues: [132-500] |
1 11 21 31 41 51
| | | | | |
1 NPRGLMAMSP SVANSYLVYP SPPKVINSEI KAHATTNNIT LSVGGNTETS FKRDQQDAGH 60
61 SDISDLDQYS SFTKRDDADP TSSNGGNSSI IKNGDVIVFN LETLQPTMVI EAHKGEIAAM 120
121 AISFDGTLMA TASDKGTIIR VFDIETGDKI YQFRRGTYAT RIYSISFSED SQYLAVTGSS 180
181 KTVHIFKLGH SMSNNKLDSD DSNMEEAAAD DSSLDTTSID ALSDEENPTR LAREPYVDAS 240
241 RKTMGRMIRY SSQKLSRRAA RTLGQIFPIK VTSLLESSRH FASLKLPVET NSHVMTISSI 300
301 GSPIDIDTSE YPELFETGNS ASTESYHEPV MKMVPIRVVS SDGYLYNFVM DPERGGDCLI 360
361 LSQYSILMD
|
| Detection Method: | |
| Confidence: | 62.69897 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
