YRC Public Data Repository - Protein Structure Prediction

Protein:	FET5
Organism:	Saccharomyces cerevisiae
Length:	622 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FET5.

Description	E-value	Query Range	Subject Range
FET5_YEAST - Iron transport multicopper oxidase FET5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... FET5 - Multicopper oxidase, integral membrane protein with similarity to Fet3p; may have a role in iron tra...	0.0	[1..622]	[1..622]
FET3_CANAX - Iron transport multicopper oxidase FET3 OS=Candida albicans GN=FET3 PE=3 SV=1	0.0	[4..608]	[7..593]
gi\|7798835 - gi\|7798835\|emb\|CAB90817.1\| ferro-O2-oxidoreductase [Arxula adeninivorans]	0.0	[2..604]	[1..586]
FET3_CANGA - Iron transport multicopper oxidase FET3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 /... FET3_CANGA - Iron transport multicopper oxidase FET3 OS=Candida glabrata GN=FET3 PE=3 SV=1	0.0	[6..609]	[5..598]
gi\|13171071 - gi\|13171071\|emb\|CAC33177.1\| Fet3 protein [Pichia pastoris]	0.0	[20..608]	[2..576]
FIO1_SCHPO - Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fi... fio1 - iron transport multicopper oxidase Fio1	0.0	[3..615]	[7..600]
gi\|2264400 - gi\|2264400\|gb\|AAB63445.1\| phenoloxidase [basidiomycete CECT 20197]	0.0	[2..542]	[10..523]
gi\|16041065 - gi\|16041065\|dbj\|BAB69775.1\| laccase [Pycnoporus coccineus]	0.0	[3..542]	[7..517]
gi\|10179427, gi\|... - gi\|6466835\|gb\|AAF13052.1\|AF170093_1 laccase [Pycnoporus cinnabarinus], gi\|10179427\|gb\|AAG13724.1\|AF1...	0.0	[3..542]	[7..517]

Back

Predicted Domain #1

Region A:
Residues: [1-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFYSFVWSV LAASVALAKT HKLNYTASWV TANPDGLHEK RMIGFNGEWP LPDIHVEKGD  60
   61 RVELYLTNGF QDNTATSLHF HGLFQNTSLG NQLQMDGPSM VTQCPIVPGQ TYLYNFTVPE 120
  121 QVGTFWYHAH MGAQYGDGMR GAFIIHDPEE PFEYDHERVI TLSDHYHENY KTVTKEFLSR 180
  181 YNPTGAEPIP QNILFNNTMN VTLDFTPGET YLFRFLNVGL FVSQYIILED HEMSIVEVDG 240
  241 VYVKPNFTDS IYLSAGQRMS VLIKAKDKMP TRNYAMMQIM DETMLDVVPP ELQLNQTIQM 300
  301 RYGHSLPEAR ALNIEDCDLD RATND

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [525-565]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NENYLDICKA ADIPVVGNAA GHSNDWFDLK GLPRQPEPLP K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	599.9897
Match:	1kyaA_
Description:	Laccase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [326-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FYLEPLIERD LLAHYDHQIV MDVRMVNLGD GVKYAFFNNI TYVTPKVPTL TTLLTSGKLA  60
   61 SDPRIYGDNI NAQLLKHNDI IEVVLNNYDS GRHPFHLHGH NFQIVQKSPG FHVDEAYDES 120
  121 EQDEMTVPYN ESAPLQPFPE RPMVRDTVVL EPSGHVVLRF RADNPGVWYF HCHVDWHLQQ 180
  181 GLASVFIEAP VLLQEREKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	599.9897
Match:	1kyaA_
Description:	Laccase
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [566-622]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFTTEGYLAL IISTIIGVWG LYSIAQYGIG EVIPNDEKVY HTLREILAEN EIEVSRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits