| Protein: | SWI4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1093 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWI4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1093] | [1..1093] |
|
|
0.0 | [1..1093] | [1..1093] |
|
|
0.0 | [291..857] | [70..655] |
|
|
0.0 | [291..857] | [103..688] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MPFDVLISNQ KDNTNHQNIT PISKSVLLAP HSNHPVIEIA TYSETDVYEC YIRGFETKIV 60
61 MRRTKDDWIN ITQVFKIAQF SKTKRTKILE KESNDMQHEK VQGGYGRFQG TWIPLDSAKF 120
121 LVNKYEIIDP VVNSILTFQF DPNNPPPKRS KNSILRKTSP GTKIT
|
| Detection Method: |  |
| Confidence: | 259.38764 |
| Match: | 1mb1__ |
| Description: | DNA-binding domain of Mlu1-box binding protein MBP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.36949648004482 | bayes_pls_golite062009 |
| DNA binding | 4.06494205639151 | bayes_pls_golite062009 |
| nucleic acid binding | 3.98559547948274 | bayes_pls_golite062009 |
| transcription factor activity | 3.87642218322379 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.19892138828988 | bayes_pls_golite062009 |
| binding | 2.79149251200147 | bayes_pls_golite062009 |
| protein binding | 1.55473080522232 | bayes_pls_golite062009 |
| transcription repressor activity | 0.838109968340069 | bayes_pls_golite062009 |
|
Region A: Residues: [166-420] |
1 11 21 31 41 51
| | | | | |
1 SPSSYNKTPR KKNSSSSTSA TTTAANKKGK KNASINQPNP SPLQNLVFQT PQQFQVNSSM 60
61 NIMNNNDNHT TMNFNNDTRH NLINNISNNS NQSTIIQQQK SIHENSFNNN YSATQKPLQF 120
121 FPIPTNLQNK NVALNNPNNN DSNSYSHNID NVINSSNNNN NGNNNNLIIV PDGPMQSQQQ 180
181 QQHHHEYLTN NFNHSMMDSI TNGNSKKRRK KLNQSNEQQF YNQQEKIQRH FKLMKQPLLW 240
241 QSFQNPNDHH NEYCD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [421-510] |
1 11 21 31 41 51
| | | | | |
1 SNGSNNNNNT VASNGSSIEV FSSNENDNSM NMSSRSMTPF SAGNTSSQNK LENKMTDQEY 60
61 KQTILTILSS ERSSDVDQAL LATLYPAPKN
|
| Detection Method: | |
| Confidence: | 26.154902 |
| Match: | 1awcB_ |
| Description: | GA bindinig protein (GABP) beta 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.69918165732603 | bayes_pls_golite062009 |
| binding | 2.60916417202222 | bayes_pls_golite062009 |
| transcription regulator activity | 2.37103377984038 | bayes_pls_golite062009 |
| nucleic acid binding | 1.8957142857582 | bayes_pls_golite062009 |
| DNA binding | 1.78305438715057 | bayes_pls_golite062009 |
| transcription activator activity | 1.6418915400902 | bayes_pls_golite062009 |
| transcription factor activity | 1.2667825651547 | bayes_pls_golite062009 |
| transcription factor binding | 1.06366405671195 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.949906091645366 | bayes_pls_golite062009 |
| structural molecule activity | 0.648591660171134 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.63796241781934 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.32425530306039 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase regulator activity | 0.0462605323512499 | bayes_pls_golite062009 |
|
Region A: Residues: [511-690] |
1 11 21 31 41 51
| | | | | |
1 FNINFEIDDQ GHTPLHWATA MANIPLIKML ITLNANALQC NKLGFNCITK SIFYNNCYKE 60
61 NAFDEIISIL KICLITPDVN GRLPFHYLIE LSVNKSKNPM IIKSYMDSII LSLGQQDYNL 120
121 LKICLNYQDN IGNTPLHLSA LNLNFEVYNR LVYLGASTDI LNLDNESPAS IMNKFNTPAG 180
181
|
| Detection Method: | |
| Confidence: | 127.457575 |
| Match: | 1sw6A_ |
| Description: | Swi6 ankyrin-repeat fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [691-1093] |
1 11 21 31 41 51
| | | | | |
1 GSNSRNNNTK ADRKLARNLP QKNYYQQQQQ QQQPQNNVKI PKIIKTQHPD KEDSTADVNI 60
61 AKTDSEVNES QYLHSNQPNS TNMNTIMEDL SNINSFVTSS VIKDIKSTPS KILENSPILY 120
121 RRRSQSISDE KEKAKDNENQ VEKKKDPLNS VKTAMPSLES PSSLLPIQMS PLGKYSKPLS 180
181 QQINKLNTKV SSLQRIMGEE IKNLDNEVVE TESSISNNKK RLITIAHQIE DAFDSVSNKT 240
241 PINSISDLQS RIKETSSKLN SEKQNFIQSL EKSQALKLAT IVQDEESKVD MNTNSSSHPE 300
301 KQEDEEPIPK STSETSSPKN TKADAKFSNT VQESYDVNET LRLATELTIL QFKRRMTTLK 360
361 ISEAKSKINS SVKLDKYRNL IGITIENIDS KLDDIEKDLR ANA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
