| Protein: | RAD23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 398 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD23.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-96 | [1..398] | [1..398] |
|
|
8.0E-88 | [2..398] | [1..362] |
|
|
1.0E-86 | [2..395] | [1..383] |
|
|
6.0E-80 | [2..395] | [1..377] |
|
Region A: Residues: [1-108] |
1 11 21 31 41 51
| | | | | |
1 MVSLTFKNFK KEKVPLDLEP SNTILETKTK LAQSISCEES QIKLIYSGKV LQDSKTVSEC 60
61 GLKDGDQVVF MVSQKKSTKT KVTEPPIAPE SATTPGRENS TEASPSTD
|
| Detection Method: |  |
| Confidence: | 49.519517 |
| Match: | 1aarA_ |
| Description: | Ubiquitin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.35791544110308 | bayes_pls_golite062009 |
| hydrolase activity | 2.77871378503369 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 2.06714283858345 | bayes_pls_golite062009 |
| protein binding | 1.76858817153382 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.48147454986498 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42747465816672 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32707653701567 | bayes_pls_golite062009 |
| DNA binding | 1.22622447288034 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.0818414663245 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.570143717979967 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.366426020658587 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.364036714119806 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.249928925871521 | bayes_pls_golite062009 |
|
Region A: Residues: [109-218] |
1 11 21 31 41 51
| | | | | |
1 ASAAPAATAP EGSQPQEEQT ATTERTESAS TPGFVVGTER NETIERIMEM GYQREEVERA 60
61 LRAAFNNPDR AVEYLLMGIP ENLRQPEPQQ QTAAAAEQPS TAATTAEQPA
|
| Detection Method: | |
| Confidence: | 102.09691 |
| Match: | 1ifyA_ |
| Description: | DNA repair protein Hhr23a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [219-345] |
1 11 21 31 41 51
| | | | | |
1 EDDLFAQAAQ GGNASSGALG TTGGATDAAQ GGPPGSIGLT VEDLLSLRQV VSGNPEALAP 60
61 LLENISARYP QLREHIMANP EVFVSMLLEA VGDNMQDVME GADDMVEGED IEVTGEAAAA 120
121 GLGQGEG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.340 | 0.092 | damaged DNA binding | a.1.1 | Globin-like |
| View | Download | 0.347 | 0.020 | damaged DNA binding | a.77.1 | DEATH domain |
| View | Download | 0.476 | 0.019 | mitochondrion | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.444 | 0.017 | damaged DNA binding | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.378 | 0.004 | damaged DNA binding | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.326 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.309 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.296 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.282 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.263 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.233 | N/A | N/A | a.116.1 | GTPase activation domain, GAP |
| View | Download | 0.217 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.210 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.208 | N/A | N/A | a.4.3 | ARID-like |
| View | Download | 0.206 | N/A | N/A | a.22.1 | Histone-fold |
|
Region A: Residues: [346-398] |
1 11 21 31 41 51
| | | | | |
1 EGSFQVDYTP EDDQAISRLC ELGFERDLVI QVYFACDKNE EAAANILFSD HAD
|
| Detection Method: | |
| Confidence: | 74.39794 |
| Match: | 1f4iA_ |
| Description: | DNA repair protein Hhr23a |
Matching Structure (courtesy of the PDB): |
|
