| Protein: | YSP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1438 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSP2.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [159..1425] | [87..1334] |
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0.0 | [539..1056] | [31..601] |
|
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0.0 | [445..981] | [2..547] |
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0.0 | [524..1040] | [106..594] |
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0.0 | [632..1012] | [2..459] |
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0.0 | [592..1013] | [138..593] |
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Region A: Residues: [1-469] |
1 11 21 31 41 51
| | | | | |
1 MRDEATRKKR SFSDGHFFKK LKLMSRKKQP VMERSKTTRT RKESTNSAAK SSLSLRRANN 60
61 GRKTIAKRRV LTDIGSTNEG VAGNSGSNSP AQYSHTPHFS DSIPPLPLEL PDIVSIRSSR 120
121 SHISNKSNKN KHGIDLTFIP RRSLQNSKAG LKKPNTSPQG YFNIPVTIDR ASEKVKHTDT 180
181 KNTFNSSSSE NERPVLSILQ KDDSQSSSHP AIDSMSAPNN INNNNDIENS SNSLFDTILS 240
241 IAHSAISHVP KISALNTEIQ REFSHSGESH TGSTRHPYFH IHHAQQQHPL SQQQGPLPVS 300
301 ENANQNPNDT VLIHSPSANT AHRSSSFLRH LDYLLSPTSG PASDKHTQVE EGDDEEELSP 360
361 LSKAFLSPST QLVPTNTSTT PLSGSLTPNN RNVNANSNSE TENDNDRDDR SNVGKVKFQP 420
421 LKVHEPAIST FGKGNLTLEA VAGSSDIDNT TIDLDENNTN NNPNASSTN
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [470-621] |
1 11 21 31 41 51
| | | | | |
1 LSHISKSNVN NNLGPKELNT SYRNSTYIDM ARFENSQSNL SSHRARSKTL PANKALENAV 60
61 GDEGNSKRNS RYSSYSNDMA FDDADERKFR SMSKKFLNRR SFSPSNLGNK VIPGINLRNS 120
121 FNKNRNSSSD FFSTNQGQQM PRTSTAGSGN IH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [622-770] |
1 11 21 31 41 51
| | | | | |
1 AIMGLDSGND DFKLEGIEYA SEKKNSEFHT LFKDCDINPN EKLIVDHSCA LSRDILLQGR 60
61 MYISDAHIGF FSNILGWVST VFIPFKEIVQ IEKKTTAGIF PNGIVIDTLH TKYIFASFMS 120
121 RDATFDLITD VWNQIILGKK YRNGFGNND
|
| Detection Method: | |
| Confidence: | 26.267606 |
| Match: | PF02893 |
| Description: | GRAM domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.445 | 0.402 | apoptosis | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.501 | 0.235 | apoptosis | b.29.1 | Concanavalin A-like lectins/glucanases |
| View | Download | 0.466 | 0.079 | mitochondrion | b.60.1 | Lipocalins |
| View | Download | 0.449 | 0.001 | apoptosis | c.57.1 | Molybdenum cofactor biosynthesis proteins |
| View | Download | 0.436 | N/A | N/A | c.57.1 | Molybdenum cofactor biosynthesis proteins |
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Region A: Residues: [771-829] |
1 11 21 31 41 51
| | | | | |
1 DGTISDSSSA FFDDSDDNDD DGDLDDDDPD INSTDMTSSD DIDADVFNES NDLGKNQKS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.391 | a.4.1 | Homeodomain-like |
| View | Download | 0.360 | a.4.1 | Homeodomain-like |
| View | Download | 0.265 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.238 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.237 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.211 | a.4.1 | Homeodomain-like |
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Region A: Residues: [830-916] |
1 11 21 31 41 51
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1 TNYLLGPNKH SPTTADFKPS NNDHLVIEAN INAPLGKVVN LLYGEDVSYY ERILKAQKNF 60
61 EISPIPNNFL TKKIRDYAYT KPLSGSI
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.505 | 0.004 | apoptosis | d.95.2 | Homing endonucleases |
| View | Download | 0.493 | 0.001 | apoptosis | d.58.12 | eEF-1beta-like |
| View | Download | 0.481 | 0.001 | apoptosis | d.212.1 | TolA/TonB C-terminal domain |
| View | Download | 0.505 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.504 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.493 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.481 | N/A | N/A | d.212.1 | TolA/TonB C-terminal domain |
| View | Download | 0.476 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.458 | N/A | N/A | d.94.2 | Putative transcriptional regulator TM1602, C-terminal domain |
| View | Download | 0.456 | N/A | N/A | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.443 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.440 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.421 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.416 | N/A | N/A | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.387 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.387 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.378 | N/A | N/A | c.5.1 | MurCD N-terminal domain |
| View | Download | 0.358 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.325 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.322 | N/A | N/A | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.316 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.314 | N/A | N/A | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.310 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.301 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.298 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.298 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.296 | N/A | N/A | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.294 | N/A | N/A | d.58.2 | Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |
| View | Download | 0.294 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.293 | N/A | N/A | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.282 | N/A | N/A | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.274 | N/A | N/A | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.260 | N/A | N/A | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.256 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.244 | N/A | N/A | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.236 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.226 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.224 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.214 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.203 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
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Region A: Residues: [917-1004] |
1 11 21 31 41 51
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1 GPSKTKCLIT DTLEHYDLED YVKVLSITKN PDVPSGNIFS VKTVFLFSWD KNNSTKLTVY 60
61 NSVDWTGKSW IKSMIEKGTF DGVADTTK
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.523 | d.129.3 | Bet v1-like |
| View | Download | 0.499 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.523 | d.129.3 | Bet v1-like |
| View | Download | 0.502 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.502 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.499 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.485 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.485 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.450 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.433 | b.1.5 | Transglutaminase, two C-terminal domains |
| View | Download | 0.427 | d.17.1 | Cystatin/monellin |
| View | Download | 0.393 | d.58.12 | eEF-1beta-like |
| View | Download | 0.376 | b.1.18 | E set domains |
| View | Download | 0.371 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.366 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.359 | b.1.5 | Transglutaminase, two C-terminal domains |
| View | Download | 0.335 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.320 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.311 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.307 | d.17.4 | NTF2-like |
| View | Download | 0.305 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.297 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.296 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.291 | d.17.4 | NTF2-like |
| View | Download | 0.281 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.279 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.277 | b.1.12 | Purple acid phosphatase, N-terminal domain |
| View | Download | 0.268 | b.61.1 | Avidin/streptavidin |
| View | Download | 0.258 | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.256 | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.250 | d.17.4 | NTF2-like |
| View | Download | 0.248 | d.17.4 | NTF2-like |
| View | Download | 0.245 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.244 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
| View | Download | 0.231 | b.16.1 | Ecotin, trypsin inhibitor |
| View | Download | 0.231 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.224 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.218 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.212 | b.1.5 | Transglutaminase, two C-terminal domains |
| View | Download | 0.208 | d.107.1 | Ran-binding protein mog1p |
| View | Download | 0.207 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
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Region A: Residues: [1005-1263] |
1 11 21 31 41 51
| | | | | |
1 IMISEIKKIL SDEDSNINSK HQASNNESEE EIINLPTIGP PVHDPTEPDF QKGKDDTVID 60
61 EKINIPVPLG TVFSLLYGDD TSYIKKIIEN QNNFNVCDIP KFVNNAREIT YTKKLNNSFG 120
121 PKQTKCIVTE TIEHMDLNSF FMVKQIVRSP DVPYGSSFSV HTRFFYSWGD HNTTNMKVVT 180
181 NVVWTGKSML KGTIEKGSID GQRSSTKQLV DDLKKIISNA SSTKKKSRRR GKTVNKRKSS 240
241 PSTIKNEKNE ENFEDTSTK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1264-1438] |
1 11 21 31 41 51
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1 NSFFSAFSML QQVNITSVQG IMTIISFFIC LIFFFRLLFH SKNTSNIQII TPGTILINGN 60
61 EYNYVPNFKT LYHVYEDNII KDARRKDSNK NNIVTDTEGL IWDWLIDRGN GTVQNSVLSN 120
121 HIKESNNKKV KLVNGVSDHK IQQLVESIKI TELQLQEMKE LLAQTDNTSA TNQLL
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1305-1438] |
1 11 21 31 41 51
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1 KNTSNIQIIT PGTILINGNE YNYVPNFKTL YHVYEDNIIK DARRKDSNKN NIVTDTEGLI 60
61 WDWLIDRGNG TVQNSVLSNH IKESNNKKVK LVNGVSDHKI QQLVESIKIT ELQLQEMKEL 120
121 LAQTDNTSAT NQLL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
