YRC Public Data Repository - Protein Structure Prediction

Protein:	YSP2
Organism:	Saccharomyces cerevisiae
Length:	1438 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSP2.

Description	E-value	Query Range	Subject Range
YHR080C - Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ... LAM4_YEAST - Membrane-anchored lipid-binding protein LAM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	0.0	[159..1425]	[87..1334]
gi\|6330416 - gi\|6330416\|dbj\|BAA86515.1\| KIAA1201 protein [Homo sapiens]	0.0	[539..1056]	[31..601]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[445..981]	[2..547]
BAGP1_ARATH - BAG-associated GRAM protein 1 OS=Arabidopsis thaliana GN=BAGP1 PE=1 SV=1	0.0	[524..1040]	[106..594]
gi\|26665873, gi\|... - gi\|26665873\|ref\|NP_082174.2\| GRAM domain containing 1A [Mus musculus], gi\|17391321\|gb\|AAH18554.1\| Gr...	0.0	[632..1012]	[2..459]
SPBC20F10.07 - GRAM domain protein YGZ7_SCHPO - Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...	0.0	[592..1013]	[138..593]

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Predicted Domain #1

Region A:
Residues: [1-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDEATRKKR SFSDGHFFKK LKLMSRKKQP VMERSKTTRT RKESTNSAAK SSLSLRRANN  60
   61 GRKTIAKRRV LTDIGSTNEG VAGNSGSNSP AQYSHTPHFS DSIPPLPLEL PDIVSIRSSR 120
  121 SHISNKSNKN KHGIDLTFIP RRSLQNSKAG LKKPNTSPQG YFNIPVTIDR ASEKVKHTDT 180
  181 KNTFNSSSSE NERPVLSILQ KDDSQSSSHP AIDSMSAPNN INNNNDIENS SNSLFDTILS 240
  241 IAHSAISHVP KISALNTEIQ REFSHSGESH TGSTRHPYFH IHHAQQQHPL SQQQGPLPVS 300
  301 ENANQNPNDT VLIHSPSANT AHRSSSFLRH LDYLLSPTSG PASDKHTQVE EGDDEEELSP 360
  361 LSKAFLSPST QLVPTNTSTT PLSGSLTPNN RNVNANSNSE TENDNDRDDR SNVGKVKFQP 420
  421 LKVHEPAIST FGKGNLTLEA VAGSSDIDNT TIDLDENNTN NNPNASSTN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [470-621]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSHISKSNVN NNLGPKELNT SYRNSTYIDM ARFENSQSNL SSHRARSKTL PANKALENAV  60
   61 GDEGNSKRNS RYSSYSNDMA FDDADERKFR SMSKKFLNRR SFSPSNLGNK VIPGINLRNS 120
  121 FNKNRNSSSD FFSTNQGQQM PRTSTAGSGN IH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [622-770]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIMGLDSGND DFKLEGIEYA SEKKNSEFHT LFKDCDINPN EKLIVDHSCA LSRDILLQGR  60
   61 MYISDAHIGF FSNILGWVST VFIPFKEIVQ IEKKTTAGIF PNGIVIDTLH TKYIFASFMS 120
  121 RDATFDLITD VWNQIILGKK YRNGFGNND

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.267606
Match:	PF02893
Description:	GRAM domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [771-829]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGTISDSSSA FFDDSDDNDD DGDLDDDDPD INSTDMTSSD DIDADVFNES NDLGKNQKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [830-916]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNYLLGPNKH SPTTADFKPS NNDHLVIEAN INAPLGKVVN LLYGEDVSYY ERILKAQKNF  60
   61 EISPIPNNFL TKKIRDYAYT KPLSGSI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [917-1004]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPSKTKCLIT DTLEHYDLED YVKVLSITKN PDVPSGNIFS VKTVFLFSWD KNNSTKLTVY  60
   61 NSVDWTGKSW IKSMIEKGTF DGVADTTK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [1005-1263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMISEIKKIL SDEDSNINSK HQASNNESEE EIINLPTIGP PVHDPTEPDF QKGKDDTVID  60
   61 EKINIPVPLG TVFSLLYGDD TSYIKKIIEN QNNFNVCDIP KFVNNAREIT YTKKLNNSFG 120
  121 PKQTKCIVTE TIEHMDLNSF FMVKQIVRSP DVPYGSSFSV HTRFFYSWGD HNTTNMKVVT 180
  181 NVVWTGKSML KGTIEKGSID GQRSSTKQLV DDLKKIISNA SSTKKKSRRR GKTVNKRKSS 240
  241 PSTIKNEKNE ENFEDTSTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [1264-1438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSFFSAFSML QQVNITSVQG IMTIISFFIC LIFFFRLLFH SKNTSNIQII TPGTILINGN  60
   61 EYNYVPNFKT LYHVYEDNII KDARRKDSNK NNIVTDTEGL IWDWLIDRGN GTVQNSVLSN 120
  121 HIKESNNKKV KLVNGVSDHK IQQLVESIKI TELQLQEMKE LLAQTDNTSA TNQLL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [1305-1438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNTSNIQIIT PGTILINGNE YNYVPNFKTL YHVYEDNIIK DARRKDSNKN NIVTDTEGLI  60
   61 WDWLIDRGNG TVQNSVLSNH IKESNNKKVK LVNGVSDHKI QQLVESIKIT ELQLQEMKEL 120
  121 LAQTDNTSAT NQLL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits