YRC Public Data Repository - Protein Structure Prediction

Protein:	BFR2
Organism:	Saccharomyces cerevisiae
Length:	534 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BFR2.

Description	E-value	Query Range	Subject Range
BFR2_YEAST - Protein BFR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BFR2 PE=1 SV=1 gi\|190404758 - gi\|190404758\|gb\|EDV08025.1\| protein BFR2 [Saccharomyces cerevisiae RM11-1a] BFR2 - Essential protein that is a component of 90S preribosomes; may be involved in rRNA processing; multi...	0.0	[1..534]	[1..534]
AATF_MOUSE - Protein AATF OS=Mus musculus GN=Aatf PE=1 SV=1	0.0	[14..500]	[15..516]
AATF_RAT - Protein AATF OS=Rattus norvegicus GN=Aatf PE=1 SV=1	0.0	[14..500]	[15..513]
AATF - apoptosis antagonizing transcription factor gi\|168279097, gi... - gi\|168279097\|dbj\|BAG11428.1\| apoptosis antagonizing transcription factor [synthetic construct], gi\|1...	0.0	[7..500]	[82..550]
BFR2_SCHPO - Protein bfr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bfr2 PE=1 SV=1 SPAC664.08c - traub transciption factor family protein	2.0E-85	[4..534]	[5..452]
gi\|42568687, gi\|... - gi\|9757854\|dbj\|BAB08488.1\| unnamed protein product [Arabidopsis thaliana], gi\|42568687\|ref\|NP_200941...	4.0E-58	[17..499]	[14..426]
kis-PA - The gene kismet is referred to in FlyBase by the symbol Dmel\kis (CG3696, FBgn0086902). It is a prot...	6.0E-52	[63..327]	[1663..1925]

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Predicted Domain #1

Region A:
Residues: [1-534]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSLADQIS DIAIKPVNKD FDIEDEENAS LFQHNEKNGE SDLSDYGNSN TEETKKAHYL  60
   61 EVEKSKLRAE KGLELNDPKY TGVKGSRQAL YEEVSENEDE EEEEEEEEEK EEDALSFRTD 120
  121 SEDEEVEIDE EESDADGGET EEAQQKRHAL SKLIQQETKQ AINKLSQSVQ RDASKGYSIL 180
  181 QQTKLFDNII DLRIKLQKAV IAANKLPLTT ESWEEAKMDD SEETKRLLKE NEKLFNNLFN 240
  241 RLINFRIKFQ LGDHITQNEE VAKHKLSKKR SLKELYQETN SLDSELKEYR TAVLNKWSTK 300
  301 VSSASGNAAL SSNKFKAINL PADVQVENQL SDMSRLMKRT KLNRRNITPL YFQKDCANGR 360
  361 LPELISPVVK DSVDDNENSD DGLDIPKNYD PRRKDNNAID ITENPYVFDD EDFYRVLLND 420
  421 LIDKKISNAH NSESAAITIT STNARSNNKL KKNIDTKASK GRKLNYSVQD PIANYEAPIT 480
  481 SGYKWSDDQI DEFFAGLLGQ RVNFNENEDE EQHARIENDE ELEAVKNDDI QIFG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pcons
Confidence:	1.66
Match:	1c1gB
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits