| Protein: | PRP42 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 544 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP42.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..544] | [1..544] |
|
|
1.0E-58 | [11..452] | [226..739] |
|
|
1.0E-51 | [9..364] | [163..522] |
|
|
4.0E-50 | [11..452] | [65..578] |
|
|
5.0E-50 | [10..387] | [351..719] |
|
|
2.0E-48 | [20..469] | [228..673] |
|
Region A: Residues: [1-193] |
1 11 21 31 41 51
| | | | | |
1 MDKYTALIHD ENFSTLTLNV SRYPKSLAYW EKLLNYIVKA SAPICKSTEP QLLKLIRCTY 60
61 SSMLNEFPYL ENYYIDFALL EYKLGNVSMS HKIFQRGLQA FNQRSLLLWT SYLKFCNNVI 120
121 SHQKQLFKKY ETAEEYVGLH FFSGEFWDLY LEQISSRCTS SKKYWNVLRK ILEIPLHSFS 180
181 KFYALWLQRI DDI
|
| Detection Method: |  |
| Confidence: | 16.045757 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.76684454218635 | bayes_pls_golite062009 |
| binding | 2.12690485191789 | bayes_pls_golite062009 |
| transcription regulator activity | 1.26149030245805 | bayes_pls_golite062009 |
| DNA binding | 0.9531600253493 | bayes_pls_golite062009 |
| protein binding | 0.931467806305272 | bayes_pls_golite062009 |
| nucleic acid binding | 0.93037889019021 | bayes_pls_golite062009 |
| transcription factor activity | 0.374364600772076 | bayes_pls_golite062009 |
|
Region A: Residues: [194-290] |
1 11 21 31 41 51
| | | | | |
1 MDLKQLSQLT SKDELLKKLK IDINYSGRKG PYLQDAKKKL KKITKEMYMV VQYQVLEIYS 60
61 IFESKIYINY YTSPETLVSS DEIETWIKYL DYTITLQ
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [291-409] |
1 11 21 31 41 51
| | | | | |
1 TDSLTHLNFQ RALLPLAHYD LVWIKYSKWL INSKNDLLGA KNVLLMGLKF SLKKTEIIKL 60
61 LYSVICKLNE YVLLRNLLEK IESSYSDNVE NVDDFEIFWD YLQFKTFCQN SLYSSRYSD
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [410-544] |
1 11 21 31 41 51
| | | | | |
1 SQSNGLLNKE LFDKVWKRLS CKEKKSGQEI LLNNLVQFYS KDTVEFVEKN IFQKIIEFGW 60
61 EYYLQNGMFW NCYCRLIYFD TSRSYLDKRQ YIVRKIWPQI DKKFAQSVLP SLTEFCESYF 120
121 PEEMDTLEEM FTEEP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
