| Protein: | PRP42 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 544 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP42.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..544] | [1..544] |
|
|
1.0E-58 | [11..452] | [226..739] |
|
|
1.0E-51 | [9..364] | [163..522] |
|
|
4.0E-50 | [11..452] | [65..578] |
|
|
5.0E-50 | [10..387] | [351..719] |
|
|
2.0E-48 | [20..469] | [228..673] |
|
Region A: Residues: [1-193] |
1 11 21 31 41 51
| | | | | |
1 MDKYTALIHD ENFSTLTLNV SRYPKSLAYW EKLLNYIVKA SAPICKSTEP QLLKLIRCTY 60
61 SSMLNEFPYL ENYYIDFALL EYKLGNVSMS HKIFQRGLQA FNQRSLLLWT SYLKFCNNVI 120
121 SHQKQLFKKY ETAEEYVGLH FFSGEFWDLY LEQISSRCTS SKKYWNVLRK ILEIPLHSFS 180
181 KFYALWLQRI DDI
|
| Detection Method: |  |
| Confidence: | 16.045757 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.76684454218635 | bayes_pls_golite062009 |
| binding | 2.12690485191789 | bayes_pls_golite062009 |
| transcription regulator activity | 1.26149030245805 | bayes_pls_golite062009 |
| DNA binding | 0.9531600253493 | bayes_pls_golite062009 |
| protein binding | 0.931467806305272 | bayes_pls_golite062009 |
| nucleic acid binding | 0.93037889019021 | bayes_pls_golite062009 |
| transcription factor activity | 0.374364600772076 | bayes_pls_golite062009 |
|
Region A: Residues: [194-290] |
1 11 21 31 41 51
| | | | | |
1 MDLKQLSQLT SKDELLKKLK IDINYSGRKG PYLQDAKKKL KKITKEMYMV VQYQVLEIYS 60
61 IFESKIYINY YTSPETLVSS DEIETWIKYL DYTITLQ
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [291-409] |
1 11 21 31 41 51
| | | | | |
1 TDSLTHLNFQ RALLPLAHYD LVWIKYSKWL INSKNDLLGA KNVLLMGLKF SLKKTEIIKL 60
61 LYSVICKLNE YVLLRNLLEK IESSYSDNVE NVDDFEIFWD YLQFKTFCQN SLYSSRYSD
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [410-544] |
1 11 21 31 41 51
| | | | | |
1 SQSNGLLNKE LFDKVWKRLS CKEKKSGQEI LLNNLVQFYS KDTVEFVEKN IFQKIIEFGW 60
61 EYYLQNGMFW NCYCRLIYFD TSRSYLDKRQ YIVRKIWPQI DKKFAQSVLP SLTEFCESYF 120
121 PEEMDTLEEM FTEEP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.585 | c.16.1 | Lumazine synthase |
| View | Download | 0.512 | d.124.1 | Ribonuclease Rh-like |
| View | Download | 0.539 | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.397 | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.464 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.395 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.359 | a.118.8 | TPR-like |
| View | Download | 0.335 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.312 | c.121.1 | Ribose/Galactose isomerase RpiB/AlsB |
| View | Download | 0.312 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.297 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.277 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.273 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.266 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.261 | d.110.4 | SNARE-like |
| View | Download | 0.259 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.256 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.254 | d.58.48 | MTH1187-like |
| View | Download | 0.249 | a.118.1 | ARM repeat |
| View | Download | 0.245 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.243 | a.126.1 | Serum albumin-like |
| View | Download | 0.240 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.237 | d.58.34 | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| View | Download | 0.233 | a.1.1 | Globin-like |
| View | Download | 0.226 | a.1.1 | Globin-like |
| View | Download | 0.223 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.222 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.216 | a.74.1 | Cyclin-like |
| View | Download | 0.211 | a.24.3 | Cytochromes |
| View | Download | 0.204 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.203 | a.74.1 | Cyclin-like |
| View | Download | 0.201 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
