| Protein: | AIR2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 344 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIR2.
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..4] | [339..12] |
|
|
310.0 | [0..3] | [178..291] |
|
|
310.0 | [0..3] | [159..294] |
|
|
308.0 | [0..3] | [170..294] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MEKNTAPFVV DTAPTTPPDK LVAPSIEEVN SNPNELRALR GQGRYFGVSD DDKDAIKEAA 60
61 PKCNNC
|
| Detection Method: |  |
| Confidence: | 28.09691 |
| Match: | 1bajA |
| Description: | HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [67-120] |
1 11 21 31 41 51
| | | | | |
1 SQRGHLKKDC PHIICSYCGA TDDHYSRHCP KAIQCSKCDE VGHYRSQCPH KWKK
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [121-172] |
1 11 21 31 41 51
| | | | | |
1 VQCTLCKSKK HSKERCPSIW RAYILVDDNE KAKPKVLPFH TIYCYNCGGK GH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [173-278] |
1 11 21 31 41 51
| | | | | |
1 FGDDCKEKRS SRVPNEDGSA FTGSNLSVEL KQEYYRHMNR NSDENEDYQF SESIYDEDPL 60
61 PRPSHKRHSQ NDHSHSGRNK RRASNFHPPP YQKSNVIQPT IRGETL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [279-344] |
1 11 21 31 41 51
| | | | | |
1 SLNNNISKNS RYQNTKVNVS SISENMYGSR YNPSTYVDNN SISNSSNYRN YNSYQPYRSG 60
61 TLGKRR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
