| Protein: | AIR2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 344 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIR2.
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..4] | [339..12] |
|
|
310.0 | [0..3] | [178..291] |
|
|
310.0 | [0..3] | [159..294] |
|
|
308.0 | [0..3] | [170..294] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MEKNTAPFVV DTAPTTPPDK LVAPSIEEVN SNPNELRALR GQGRYFGVSD DDKDAIKEAA 60
61 PKCNNC
|
| Detection Method: |  |
| Confidence: | 28.09691 |
| Match: | 1bajA |
| Description: | HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [67-120] |
1 11 21 31 41 51
| | | | | |
1 SQRGHLKKDC PHIICSYCGA TDDHYSRHCP KAIQCSKCDE VGHYRSQCPH KWKK
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [121-172] |
1 11 21 31 41 51
| | | | | |
1 VQCTLCKSKK HSKERCPSIW RAYILVDDNE KAKPKVLPFH TIYCYNCGGK GH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.621 | g.13.1 | Crambin-like |
| View | Download | 0.605 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.522 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.522 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.481 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.469 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.371 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.360 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.299 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.298 | d.254.1 | Description not found. |
| View | Download | 0.291 | a.159.4 | Description not found. |
| View | Download | 0.283 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.283 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.277 | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.268 | d.40.1 | CI-2 family of serine protease inhibitors |
|
Region A: Residues: [173-278] |
1 11 21 31 41 51
| | | | | |
1 FGDDCKEKRS SRVPNEDGSA FTGSNLSVEL KQEYYRHMNR NSDENEDYQF SESIYDEDPL 60
61 PRPSHKRHSQ NDHSHSGRNK RRASNFHPPP YQKSNVIQPT IRGETL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.493 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.385 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.355 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.355 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.263 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.243 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.203 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.203 | N/A | N/A | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
|
Region A: Residues: [279-344] |
1 11 21 31 41 51
| | | | | |
1 SLNNNISKNS RYQNTKVNVS SISENMYGSR YNPSTYVDNN SISNSSNYRN YNSYQPYRSG 60
61 TLGKRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.372 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.339 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.332 | d.344.1 | Description not found. |
| View | Download | 0.327 | d.17.3 | Disulfide bond isomerase, DsbC, N-terminal domain |
| View | Download | 0.320 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.299 | d.17.3 | Disulfide bond isomerase, DsbC, N-terminal domain |
| View | Download | 0.273 | g.39.1 | Glucocorticoid receptor-like (DNA-binding domain) |
| View | Download | 0.251 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.235 | a.4.1 | Homeodomain-like |
| View | Download | 0.228 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.228 | g.41.17 | Description not found. |
| View | Download | 0.222 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.213 | a.39.1 | EF-hand |
