| Protein: | BPL1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 690 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BPL1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..690] | [1..690] |
|
|
0.0 | [1..687] | [1..630] |
|
|
0.0 | [2..689] | [163..726] |
|
|
0.0 | [177..689] | [290..722] |
|
|
0.0 | [3..255] | [6..251] |
|
|
0.0 | [3..255] | [4..249] |
|
|
2.0E-96 | [224..687] | [1802..2240] |
|
|
3.0E-94 | [3..274] | [6..255] |
|
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1.0E-84 | [1..258] | [1..242] |
|
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2.0E-71 | [364..688] | [57..329] |
|
Region A: Residues: [1-263] |
1 11 21 31 41 51
| | | | | |
1 MNVLVYNGPG TTPGSVKHAV ESLRDFLEPY YAVSTVNVKV LQTEPWMSKT SAVVFPGGAD 60
61 LPYVQACQPI ISRLKHFVSK QGGVFIGFCA GGYFGTSRVE FAQGDPTMEV SGSRDLRFFP 120
121 GTSRGPAYNG FQYNSEAGAR AVKLNLPDGS QFSTYFNGGA VFVDADKFDN VEILATYAEH 180
181 PDVPSSDSGK GQSENPAAVV LCTVGRGKVL LTGPHPEFNV RFMRKSTDKH FLETVVENLK 240
241 AQEIMRLKFM RTVLTKTGLN CNN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [264-348] |
1 11 21 31 41 51
| | | | | |
1 DFNYVRAPNL TPLFMASAPN KRNYLQEMEN NLAHHGMHAN NVELCSELNA ETDSFQFYRG 60
61 YRASYDAASS SLLHKEPDEV PKTVI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.629 | a.4.1 | Homeodomain-like |
| View | Download | 0.551 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.716 | a.77.1 | DEATH domain |
| View | Download | 0.418 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.452 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.716 | a.77.1 | DEATH domain |
| View | Download | 0.629 | a.4.1 | Homeodomain-like |
| View | Download | 0.551 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.458 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.452 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.415 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.415 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.391 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.367 | a.77.1 | DEATH domain |
| View | Download | 0.364 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.363 | g.53.1 | TAZ domain |
| View | Download | 0.361 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.348 | d.45.1 | ClpS-like |
| View | Download | 0.346 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.312 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.294 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.290 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.288 | a.3.1 | Cytochrome c |
| View | Download | 0.285 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.277 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.270 | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.260 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.256 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.255 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.255 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.245 | a.39.1 | EF-hand |
| View | Download | 0.234 | d.58.17 | Metal-binding domain |
| View | Download | 0.225 | d.58.17 | Metal-binding domain |
| View | Download | 0.219 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.219 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.216 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.210 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.209 | a.74.1 | Cyclin-like |
| View | Download | 0.209 | a.35.1 | lambda repressor-like DNA-binding domains |
|
Region A: Residues: [349-622] |
1 11 21 31 41 51
| | | | | |
1 FPGVDEDIPP FQYTPNFDMK EYFKYLNVQN TIGSLLLYGE VVTSTSTILN NNKSLLSSIP 60
61 ESTLLHVGTI QVSGRGRGGN TWINPKGVCA STAVVTMPLQ SPVTNRNISV VFVQYLSMLA 120
121 YCKAILSYAP GFSDIPVRIK WPNDLYALSP TYYKRKNLKL VNTGFEHTKL PLGDIEPAYL 180
181 KISGLLVNTH FINNKYCLLL GCGINLTSDG PTTSLQTWID ILNEERQQLH LDLLPAIKAE 240
241 KLQALYMNNL EVILKQFINY GAAEILPSYY ELWL
|
| Detection Method: | |
| Confidence: | 85.68867 |
| Match: | 1bia__ |
| Description: | Biotin repressor, N-terminal domain; Biotin repressor/biotin holoenzyme synthetase, C-terminal domain; Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| aminoacyl-tRNA ligase activity | 4.83057889638134 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 4.8294067084702 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 4.8294067084702 | bayes_pls_golite062009 |
| ligase activity | 3.75598318664255 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 1.35137682451633 | bayes_pls_golite062009 |
| binding | 0.904147650999471 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 0.793195358470619 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 0.788242088202643 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 0.681379128250628 | bayes_pls_golite062009 |
| transcription regulator activity | 0.63339258210663 | bayes_pls_golite062009 |
| nucleic acid binding | 0.609853081467937 | bayes_pls_golite062009 |
| DNA binding | 0.48413861319521 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 0.435766663027965 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 0.334773354741163 | bayes_pls_golite062009 |
| lysine-tRNA ligase activity | 0.333541891861949 | bayes_pls_golite062009 |
| ATP binding | 0.18403217430648 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.145955341735342 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.127823774098159 | bayes_pls_golite062009 |
|
Region A: Residues: [623-690] |
1 11 21 31 41 51
| | | | | |
1 HSNQIVTLPD HGNTQAMITG ITEDYGLLIA KELVSGSSTQ FTGNVYNLQP DGNTFDIFKS 60
61 LIAKKVQS
|
| Detection Method: | |
| Confidence: | 85.68867 |
| Match: | 1bia__ |
| Description: | Biotin repressor, N-terminal domain; Biotin repressor/biotin holoenzyme synthetase, C-terminal domain; Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain |
| Matching Structure (courtesy of the PDB): |
|
