| Protein: | SLX5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 619 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLX5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..619] | [1..619] |
|
Region A: Residues: [1-619] |
1 11 21 31 41 51
| | | | | |
1 MHSDTNGRTK SNNSPSDNNP NETVILIDSD KEEDASIREA NLPVRLYPDR RVGRRRDALN 60
61 RFVRSDSRSR NSQRTHITAS SERPDFQANN DDITIIREVG RFFGDDGPID PSAHYVDLDQ 120
121 EPGSETLETP RTIQVDNTNG YLNDNGNNNE SDDGLTIVEE RTTRPRVTLN LPGGERLEVT 180
181 ATTTDIPIRR SFEFQEDLGA SRRQLLRRSA TRARNLFVDR SDENDEDWTD DTHNLPEAIQ 240
241 RARRESRMRM SRRIAERQRR VQQQRVSSDE NISTSIRLQS IRERIQSYTP DIRSAFHRAE 300
301 SLHEFRSILQ NVAPITLQEC EEELMALFTE FRNQLLQNWA IDRVRNTQEE ALRLHREALE 360
361 RQERTAGRVF HRGTLRESIT NYLNFNGEDG FLSRLWSGPA LSDADEERHT QNIIDMIQER 420
421 EERERDVVMK NLMNKTRAQQ EEFEARAASL PEGYSASFDT TPKMKLDITK NGKEETIIVT 480
481 DDDLAKTLED IPVCCLCGAE LGVGIPDDFT GISQKDRGVS FEGLVSKYKF HCPYQTLARP 540
541 SMLDRDLSKR TFIASCGHAF CGRCFARIDN AKKKSKMPKK KLAQLKGSAH PDNYGPKLCP 600
601 ADSCKKLIRS RGRLKEVYF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [129-224] |
1 11 21 31 41 51
| | | | | |
1 TPRTIQVDNT NGYLNDNGNN NESDDGLTIV EERTTRPRVT LNLPGGERLE VTATTTDIPI 60
61 RRSFEFQEDL GASRRQLLRR SATRARNLFV DRSDEN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [225-400] |
1 11 21 31 41 51
| | | | | |
1 DEDWTDDTHN LPEAIQRARR ESRMRMSRRI AERQRRVQQQ RVSSDENIST SIRLQSIRER 60
61 IQSYTPDIRS AFHRAESLHE FRSILQNVAP ITLQECEEEL MALFTEFRNQ LLQNWAIDRV 120
121 RNTQEEALRL HREALERQER TAGRVFHRGT LRESITNYLN FNGEDGFLSR LWSGPA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [401-619] |
1 11 21 31 41 51
| | | | | |
1 LSDADEERHT QNIIDMIQER EERERDVVMK NLMNKTRAQQ EEFEARAASL PEGYSASFDT 60
61 TPKMKLDITK NGKEETIIVT DDDLAKTLED IPVCCLCGAE LGVGIPDDFT GISQKDRGVS 120
121 FEGLVSKYKF HCPYQTLARP SMLDRDLSKR TFIASCGHAF CGRCFARIDN AKKKSKMPKK 180
181 KLAQLKGSAH PDNYGPKLCP ADSCKKLIRS RGRLKEVYF
|
| Detection Method: | |
| Confidence: | 1.21 |
| Match: | 1zbdB |
| Description: | Effector domain of rabphilin-3a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 6.54419701634876 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 5.81081610285635 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 4.98431511196461 | bayes_pls_golite062009 |
| binding | 2.64299129598715 | bayes_pls_golite062009 |
| histone binding | 2.18177552065219 | bayes_pls_golite062009 |
| ligase activity | 1.77976870053311 | bayes_pls_golite062009 |
| protein binding | 1.22943142958169 | bayes_pls_golite062009 |
| DNA binding | 1.19418339248022 | bayes_pls_golite062009 |
| nucleic acid binding | 1.16305426959673 | bayes_pls_golite062009 |
| transcription regulator activity | 1.03976333752272 | bayes_pls_golite062009 |
| chromatin binding | 0.880691867408093 | bayes_pls_golite062009 |
| methylated histone residue binding | 0.635303636820801 | bayes_pls_golite062009 |
| protein kinase activity | 0.408714103048697 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.152196493675947 | bayes_pls_golite062009 |
| transcription factor activity | 0.124593950007804 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.108887977080526 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.108887977080526 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.0912529186589195 | bayes_pls_golite062009 |
| kinase activity | 0.00873885939655655 | bayes_pls_golite062009 |
