| Protein: | HMRA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 126 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMRA1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-34 | [1..126] | [1..126] |
|
|
6.0E-33 | [17..126] | [83..193] |
|
|
6.0E-33 | [17..126] | [83..193] |
|
|
7.0E-33 | [17..126] | [83..193] |
|
|
1.0E-32 | [17..126] | [83..193] |
|
|
5.0E-31 | [18..126] | [107..218] |
|
|
1.0E-30 | [12..126] | [494..602] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MDDICSMAEN INRTLFNILG TEIDEINLNT NNLYNFIMES NLTKVEQHTL HKNISNNRLE 60
61 IYHHIKKEKS PKGKSSISPQ ARAFLEQVFR RKQSLNSKEK EEVAKKCGIT PLQVRVWFIN 120
121 KRMRSK
|
| Detection Method: |  |
| Confidence: | 253.09691 |
| Match: | 1f43A_ |
| Description: | Mating type protein A1 Homeodomain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
