| Protein: | SRB8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1427 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRB8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1427] | [1..1427] |
|
|
0.0 | [202..1427] | [1..1226] |
|
|
0.0 | [701..1056] | [1..356] |
|
|
4.0E-86 | [50..391] | [64..354] |
|
|
2.0E-85 | [21..315] | [46..344] |
|
|
1.0E-79 | [31..299] | [13..316] |
|
|
3.0E-58 | [21..232] | [10..207] |
|
Region A: Residues: [1-340] |
1 11 21 31 41 51
| | | | | |
1 MNNGSGRYLL TPPDDLHPYV PSSKPQEQVY PDFKPWEHTA AEDQILANFV AKGFYHTPMV 60
61 NFESISARSS VHESLVTQSN ILSQQFDKII KIREDHINKI PSNSTTTLHG PGFQLPNRIT 120
121 LTDHRKETWL HELSSSHTSL VKIGKFIPHG LKRRQVIEQC YLKFIPLKRA IWLIKCCYFI 180
181 EWKSNHKKKR SNAAGADDAI SMHLLKDWTD TFVYILEKLI FDMTNHYNDS QQLRTWKRQI 240
241 SYFLKLLGNC YSLRLINKEI FHHWLVEFIN KMENFEFLPL SLHILMIFWN DICQIDTNAP 300
301 VAATITSSQK EPFFLVTKIT DMLLHKYYIV SSSKSMINDE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [341-665] |
1 11 21 31 41 51
| | | | | |
1 NYIINDIKKN NKIKLNILKI LSSLILKIFQ EQSLEVFIFP TSNWEIYKPL LFEIVSNADT 60
61 NQNSDMKKKL ELISYRNESL KNNSSIRNVI MSASNANDFQ LTIVTCKQFP KLSCIQLNCI 120
121 DTQFTKLLDD NPTEFDWPTY VDQNPLTMHK IIQLILWSIH PSRQFDHYES NQLVAKLLLL 180
181 RINSTDEDLH EFQIEDAIWS LVFQLAKNFS AQKRVVSYMM PSLYRLLNIL ITYGIIKVPT 240
241 YIRKLISSGL LYLQDSNDKF VHVQLLINLK ISPLMKSQYN MVLRNVMEYD VKFYEIFNFD 300
301 QLVEITEQIK MRILSNDITN LQLSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [666-1059] |
1 11 21 31 41 51
| | | | | |
1 TPLSIKIMVA EWYLSHLCSG ILSSVNRTVL LKIFKIFCID LEVFHHFFKW IEFIVYHQLL 60
61 SDIESLEALM DILLCYQKLF SQFINDHILF TKTFIFIYKK VLKEKDVPAY NVTSFMPFWK 120
121 FFMKNFPFVL KVDNDLRIEL QSVYNDEKLK TEKLKNDKSE VLKVYSMINN SNQAVGQTWN 180
181 FPEVFQVNIR FLLHNSEIID TNTSKQFQKA RNNVMLLIAT NLKEYNKFMS IFLKRKDFTN 240
241 KNLIQLISLK LLTFEVTQNV LGLEYIIRLL PINLENNDGS YGLFLKYHKE QFIKSNFEKI 300
301 LLTCYELEKK YHGNECEINY YEILLKILIT YGSSPKLLAT STKIIMLLLN DSVENSSNIL 360
361 EDILYYSTCP SETDLNDIPL GSGQPDNDTV VTND
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1060-1427] |
1 11 21 31 41 51
| | | | | |
1 DKSDDDDHTV DEIDHVEYYV MMDFANLWVF QAFTCFCIKK IMENNEPAMA MEDLKNFIFQ 60
61 IIEITNSNDL CSQIFDQLKD MQTIEMITQI VEKDFCTSCL QNNNQKIDDN YIVVVIEIIT 120
121 SLSMRFQRET SGMIVISMEN YHLLIKIIRQ LSELNEGNLS KREIQIDAVL KIFSFHQDSI 180
181 FQRIIADLSA DKPTSPFIDS ICKLFDKISF NLRLKLFLYE ILSSLKSFAI YSSTIDAPAF 240
241 HTSGKVELPK KLLNLPPFQV SSFVKETKLH SGDYGEEEDA DQEESFSLNL GIGIVEIAHE 300
301 NEQKWLIYDK KDHKYVCTFS MEPYHFISNY NTKYTDDMAT GSNDTTAFND SCVNLSLFDA 360
361 RFERKNPH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [548-637] |
1 11 21 31 41 51
| | | | | |
1 NFSAQKRVVS YMMPSLYRLL NILITYGIIK VPTYIRKLIS SGLLYLQDSN DKFVHVQLLI 60
61 NLKISPLMKS QYNMVLRNVM EYDVKFYEIF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [638-845] |
1 11 21 31 41 51
| | | | | |
1 NFDQLVEITE QIKMRILSND ITNLQLSKTP LSIKIMVAEW YLSHLCSGIL SSVNRTVLLK 60
61 IFKIFCIDLE VFHHFFKWIE FIVYHQLLSD IESLEALMDI LLCYQKLFSQ FINDHILFTK 120
121 TFIFIYKKVL KEKDVPAYNV TSFMPFWKFF MKNFPFVLKV DNDLRIELQS VYNDEKLKTE 180
181 KLKNDKSEVL KVYSMINNSN QAVGQTWN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [846-1058] |
1 11 21 31 41 51
| | | | | |
1 FPEVFQVNIR FLLHNSEIID TNTSKQFQKA RNNVMLLIAT NLKEYNKFMS IFLKRKDFTN 60
61 KNLIQLISLK LLTFEVTQNV LGLEYIIRLL PINLENNDGS YGLFLKYHKE QFIKSNFEKI 120
121 LLTCYELEKK YHGNECEINY YEILLKILIT YGSSPKLLAT STKIIMLLLN DSVENSSNIL 180
181 EDILYYSTCP SETDLNDIPL GSGQPDNDTV VTN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1059-1251] |
1 11 21 31 41 51
| | | | | |
1 DDKSDDDDHT VDEIDHVEYY VMMDFANLWV FQAFTCFCIK KIMENNEPAM AMEDLKNFIF 60
61 QIIEITNSND LCSQIFDQLK DMQTIEMITQ IVEKDFCTSC LQNNNQKIDD NYIVVVIEII 120
121 TSLSMRFQRE TSGMIVISME NYHLLIKIIR QLSELNEGNL SKREIQIDAV LKIFSFHQDS 180
181 IFQRIIADLS ADK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1252-1427] |
1 11 21 31 41 51
| | | | | |
1 PTSPFIDSIC KLFDKISFNL RLKLFLYEIL SSLKSFAIYS STIDAPAFHT SGKVELPKKL 60
61 LNLPPFQVSS FVKETKLHSG DYGEEEDADQ EESFSLNLGI GIVEIAHENE QKWLIYDKKD 120
121 HKYVCTFSME PYHFISNYNT KYTDDMATGS NDTTAFNDSC VNLSLFDARF ERKNPH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
