| Protein: | RSC6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 483 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSC6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..483] | [1..483] |
|
|
0.0 | [14..473] | [67..432] |
|
|
0.0 | [14..473] | [90..454] |
|
|
0.0 | [6..474] | [126..511] |
|
|
0.0 | [6..474] | [126..511] |
|
|
0.0 | [8..473] | [125..494] |
|
Region A: Residues: [1-266] |
1 11 21 31 41 51
| | | | | |
1 MVTQTNPVPV TYPTDAYIPT YLPDDKVSNL ADLKKLIEMD SRLDLYLTRR RLDTSINLPT 60
61 NTKTKDHPPN KEMLRIYVYN TTESSPRSDS GTPADSGKTT WTLRIEGKLL HESANGKHPF 120
121 SEFLEGVAVD FKRLKPLGMG KKRKRDSSLS LPLNLQQPEY NDQDSTMGDN DNGEDEDSAE 180
181 AESREEIVDA LEWNYDENNV VEFDGIDIKR QGKDNLRCSI TIQLRGVDGG KVQYSPNLAT 240
241 LIGMQTGSVN DAVYSIYKYI LINNLF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [267-326] |
1 11 21 31 41 51
| | | | | |
1 VTEQTEAQDG SNDAEDSSNE NNNKNGAGDD DGVEGSTPKD KPELGEVKLD SLLQKVLDTN 60
61
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [327-483] |
1 11 21 31 41 51
| | | | | |
1 AAHLPLMNVV QTVNKLVSPL PPIILDYTID LSKDTTYGAT TLDVDVSHIL HQPQPQPNLQ 60
61 KEEETDAEDT AKLREITKLA LQLNSSAQKY QFFHELSLHP RETLTHYLWS SKQNELVLQG 120
121 DQYFNEDAAR TSDIYSNNNN DRSLMGNISL LYSQGRL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [214-378] |
1 11 21 31 41 51
| | | | | |
1 DNLRCSITIQ LRGVDGGKVQ YSPNLATLIG MQTGSVNDAV YSIYKYILIN NLFVTEQTEA 60
61 QDGSNDAEDS SNENNNKNGA GDDDGVEGST PKDKPELGEV KLDSLLQKVL DTNAAHLPLM 120
121 NVVQTVNKLV SPLPPIILDY TIDLSKDTTY GATTLDVDVS HILHQ
|
| Detection Method: | |
| Confidence: | 29.69897 |
| Match: | 1uhrA |
| Description: | Solution structure of the SWIB domain of mouse BRG1-associated factor 60a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.01592136607858 | bayes_pls_golite062009 |
| basal transcription repressor activity | 3.09418413549897 | bayes_pls_golite062009 |
| binding | 2.67987108623459 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.58234407051051 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.32480271621458 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98538788872171 | bayes_pls_golite062009 |
| transcription activator activity | 1.83085389017135 | bayes_pls_golite062009 |
| transcription factor binding | 1.73032563380905 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.60414428986898 | bayes_pls_golite062009 |
| protein binding | 1.58138506346812 | bayes_pls_golite062009 |
| structural molecule activity | 1.28917299936669 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06026105710513 | bayes_pls_golite062009 |
| catalytic activity | 0.121624777548864 | bayes_pls_golite062009 |
|
Region A: Residues: [379-483] |
1 11 21 31 41 51
| | | | | |
1 PQPQPNLQKE EETDAEDTAK LREITKLALQ LNSSAQKYQF FHELSLHPRE TLTHYLWSSK 60
61 QNELVLQGDQ YFNEDAARTS DIYSNNNNDR SLMGNISLLY SQGRL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
