| Protein: | POL4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 582 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POL4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..582] | [1..582] |
|
|
0.0 | [27..574] | [13..509] |
|
|
0.0 | [27..574] | [13..517] |
|
|
0.0 | [27..574] | [24..519] |
|
|
0.0 | [27..574] | [24..546] |
|
|
0.0 | [27..574] | [17..508] |
|
|
0.0 | [26..574] | [12..506] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MSLKGKFFAF LPNPNTSSNK FFKSILEKKG ATIVSSIQNC LQSSRKEVVI LIEDSFVDSD 60
61 MHLTQKDIFQ REAGLNDVDE FLGKIEQSGI Q
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [92-149] |
1 11 21 31 41 51
| | | | | |
1 CVKTSCITKW VQNDKFAFQK DDLIKFQPSI IVISDNADDG QSSTDKESEI STDVESER
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| DNA polymerase activity | 1.73758028049287 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 1.72676695496584 | bayes_pls_golite062009 |
| catalytic activity | 0.60409960326459 | bayes_pls_golite062009 |
|
Region A: Residues: [150-264] |
1 11 21 31 41 51
| | | | | |
1 NDDSNNKDMI QASKPLKRLL QGDKGRASLV TDKTKYKNNE LIIGALKRLT KKYEIEGEKF 60
61 RARSYRLAKQ SMENCDFNVR SGEEAHTKLR NIGPSIAKKI QVILDTGVLP GLNDS
|
| Detection Method: | |
| Confidence: | 216.0103 |
| Match: | 1jmsA_ |
| Description: | Terminal deoxynucleotidyl transferase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [265-318] |
1 11 21 31 41 51
| | | | | |
1 VGLEDKLKYF KNCYGIGSEI AKRWNLLNFE SFCVAAKKDP EEFVSDWTIL FGWS
|
| Detection Method: | |
| Confidence: | 216.0103 |
| Match: | 1jmsA_ |
| Description: | Terminal deoxynucleotidyl transferase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [319-582] |
1 11 21 31 41 51
| | | | | |
1 YYDDWLCKMS RNECFTHLKK VQKALRGIDP ECQVELQGSY NRGYSKCGDI DLLFFKPFCN 60
61 DTTELAKIME TLCIKLYKDG YIHCFLQLTP NLEKLFLKRI VERFRTAKIV GYGERKRWYS 120
121 SEIIKKFFMG VKLSPRELEE LKEMKNDEGT LLIEEEEEEE TKLKPIDQYM SLNAKDGNYC 180
181 RRLDFFCCKW DELGAGRIHY TGSKEYNRWI RILAAQKGFK LTQHGLFRNN ILLESFNERR 240
241 IFELLNLKYA EPEHRNIEWE KKTA
|
| Detection Method: | |
| Confidence: | 216.0103 |
| Match: | 1jmsA_ |
| Description: | Terminal deoxynucleotidyl transferase |
| Matching Structure (courtesy of the PDB): |
|
