| Protein: | POL4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 582 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POL4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..582] | [1..582] |
|
|
0.0 | [27..574] | [13..509] |
|
|
0.0 | [27..574] | [13..517] |
|
|
0.0 | [27..574] | [24..519] |
|
|
0.0 | [27..574] | [24..546] |
|
|
0.0 | [27..574] | [17..508] |
|
|
0.0 | [26..574] | [12..506] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MSLKGKFFAF LPNPNTSSNK FFKSILEKKG ATIVSSIQNC LQSSRKEVVI LIEDSFVDSD 60
61 MHLTQKDIFQ REAGLNDVDE FLGKIEQSGI Q
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.319 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.460 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.322 | N/A | N/A | c.10.2 | L domain-like |
| View | Download | 0.363 | N/A | N/A | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.303 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.299 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.295 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.280 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.269 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.260 | N/A | N/A | d.58.34 | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| View | Download | 0.260 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.255 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.253 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.250 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.235 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.228 | N/A | N/A | d.113.1 | Nudix |
| View | Download | 0.226 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.224 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.222 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.219 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.215 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.210 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.207 | N/A | N/A | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.202 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
|
Region A: Residues: [92-149] |
1 11 21 31 41 51
| | | | | |
1 CVKTSCITKW VQNDKFAFQK DDLIKFQPSI IVISDNADDG QSSTDKESEI STDVESER
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.575 | d.58.17 | Metal-binding domain |
| View | Download | 0.479 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.553 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.494 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.443 | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| View | Download | 0.431 | d.58.17 | Metal-binding domain |
| View | Download | 0.382 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.359 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.343 | d.58.5 | GlnB-like |
| View | Download | 0.336 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.307 | d.58.17 | Metal-binding domain |
| View | Download | 0.288 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.283 | d.58.17 | Metal-binding domain |
| View | Download | 0.266 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.238 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.225 | g.3.11 | EGF/Laminin |
| View | Download | 0.212 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.203 | d.10.1 | DNA-binding domain |
| View | Download | 0.202 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.201 | d.45.1 | ClpS-like |
| Term | Confidence | Notes |
| DNA polymerase activity | 1.73758028049287 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 1.72676695496584 | bayes_pls_golite062009 |
| catalytic activity | 0.60409960326459 | bayes_pls_golite062009 |
|
Region A: Residues: [150-264] |
1 11 21 31 41 51
| | | | | |
1 NDDSNNKDMI QASKPLKRLL QGDKGRASLV TDKTKYKNNE LIIGALKRLT KKYEIEGEKF 60
61 RARSYRLAKQ SMENCDFNVR SGEEAHTKLR NIGPSIAKKI QVILDTGVLP GLNDS
|
| Detection Method: | |
| Confidence: | 216.0103 |
| Match: | 1jmsA_ |
| Description: | Terminal deoxynucleotidyl transferase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [265-318] |
1 11 21 31 41 51
| | | | | |
1 VGLEDKLKYF KNCYGIGSEI AKRWNLLNFE SFCVAAKKDP EEFVSDWTIL FGWS
|
| Detection Method: | |
| Confidence: | 216.0103 |
| Match: | 1jmsA_ |
| Description: | Terminal deoxynucleotidyl transferase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [319-582] |
1 11 21 31 41 51
| | | | | |
1 YYDDWLCKMS RNECFTHLKK VQKALRGIDP ECQVELQGSY NRGYSKCGDI DLLFFKPFCN 60
61 DTTELAKIME TLCIKLYKDG YIHCFLQLTP NLEKLFLKRI VERFRTAKIV GYGERKRWYS 120
121 SEIIKKFFMG VKLSPRELEE LKEMKNDEGT LLIEEEEEEE TKLKPIDQYM SLNAKDGNYC 180
181 RRLDFFCCKW DELGAGRIHY TGSKEYNRWI RILAAQKGFK LTQHGLFRNN ILLESFNERR 240
241 IFELLNLKYA EPEHRNIEWE KKTA
|
| Detection Method: | |
| Confidence: | 216.0103 |
| Match: | 1jmsA_ |
| Description: | Terminal deoxynucleotidyl transferase |
| Matching Structure (courtesy of the PDB): |
|
