| Protein: | SSH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 490 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSH1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..480] | [2..471] |
|
|
0.0 | [3..480] | [2..474] |
|
|
0.0 | [3..480] | [2..474] |
|
|
0.0 | [4..480] | [3..474] |
|
|
0.0 | [2..474] | [3..470] |
|
|
0.0 | [3..480] | [2..474] |
|
|
0.0 | [4..480] | [3..474] |
|
|
0.0 | [4..480] | [3..474] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MSGFRLIDIV KPILPILPEV ELPFEKLPFD DKIVYTIFAG LIYLFAQFPL VGLPKATTPN 60
61 VNDPIYFLRG VFGC
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.339 | 0.029 | cotranslational protein targeting to membrane | a.77.1 | DEATH domain |
| View | Download | 0.362 | 0.008 | cotranslational protein targeting to membrane | a.7.7 | BAG domain |
| View | Download | 0.453 | 0.005 | cotranslational protein targeting to membrane | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.495 | 0.003 | cotranslational protein targeting to membrane | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.330 | 0.002 | cotranslational protein targeting to membrane | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.313 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.300 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.289 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.278 | N/A | N/A | a.105.1 | FIS-like |
| View | Download | 0.253 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.246 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.246 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.242 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.233 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.232 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.231 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.211 | N/A | N/A | d.70.1 | Yest killer toxins |
| View | Download | 0.206 | N/A | N/A | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.205 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.201 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| Term | Confidence | Notes |
| ribonucleoprotein binding | 5.96221631042313 | bayes_pls_golite062009 |
| protein transporter activity | 5.55929343005534 | bayes_pls_golite062009 |
| transporter activity | 3.32223562584466 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.22714325269757 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.12732472524264 | bayes_pls_golite062009 |
| macromolecule transmembrane transporter activity | 2.12732472524264 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 1.76187269823414 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.67782980643723 | bayes_pls_golite062009 |
| binding | 1.4562802789412 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.42890247609405 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 1.15847548838424 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 1.15316743403707 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.10003802565492 | bayes_pls_golite062009 |
| peptide transporter activity | 1.01893828721893 | bayes_pls_golite062009 |
| protein binding | 0.674651002700028 | bayes_pls_golite062009 |
|
Region A: Residues: [75-490] |
1 11 21 31 41 51
| | | | | |
1 EPRTLLEFGL FPNISSGLIL QLLAGLKVIK VNFKIQSDRE LFQSLTKVFA IVQYVILTNI 60
61 FIFAGYFGDD LSVVQIGLIN FQLVGAGIFT TLLAEVIDKG FGFSSGAMII NTVVIATNLV 120
121 ADTFGVSQIK VGEDDQTEAQ GALINLIQGL RSKHKTFIGG IISAFNRDYL PNLTTTIIVL 180
181 AIAIIVCYLQ SVRVELPIRS TRARGTNNVY PIKLLYTGCL SVLFSYTILF YIHIFAFVLI 240
241 QLVAKNEPTH IICKIMGHYE NANNLLAVPT FPLSLLAPPT SFFKGVTQQP LTFITYSAFI 300
301 LVTGIWFADK WQAISGSSAR DVALEFKDQG ITLMGRREQN VAKELNKVIP IAAVTGASVL 360
361 SLITVIGESL GLKGKAAGIV VGIAGGFSLL EVITIEYQQS GGQSALNQVL GVPGAM
|
| Detection Method: | |
| Confidence: | 6.142668 |
| Match: | PF00344 |
| Description: | eubacterial secY protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
