| Protein: | DPB3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 201 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPB3.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-78 | [1..201] | [1..201] |
|
|
4.0E-4 | [12..91] | [42..117] |
|
|
0.004 | [12..93] | [19..96] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MSNLVKEKAP VFPISKVKKI AKCDPEYVIT SNVAISATAF AAELFVQNLV EESLVLAQLN 60
61 SKGKTSLRLS LNSIEECVEK RDNFRFLEDA IKQLKKNSAL DKKRELNMQ
|
| Detection Method: |  |
| Confidence: | 12.86 |
| Match: | 1jfiA |
| Description: | Negative cofactor 2, NC2, alpha chain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed DNA polymerase activity | 7.11495094825518 | bayes_pls_golite062009 |
| DNA polymerase activity | 7.07317269086318 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 4.8449005461991 | bayes_pls_golite062009 |
| DNA binding | 4.24660531286828 | bayes_pls_golite062009 |
| nucleic acid binding | 4.14026521609645 | bayes_pls_golite062009 |
| transcription regulator activity | 3.91807454227165 | bayes_pls_golite062009 |
| binding | 3.14832737946099 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.58437727844306 | bayes_pls_golite062009 |
| transcription factor activity | 2.39322722597434 | bayes_pls_golite062009 |
| transcription repressor activity | 2.253406442565 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.11715713953033 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.72510004749125 | bayes_pls_golite062009 |
| transferase activity | 1.52384026846369 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.14016287166607 | bayes_pls_golite062009 |
| transcription activator activity | 1.12739348005764 | bayes_pls_golite062009 |
| protein binding | 1.01897642648285 | bayes_pls_golite062009 |
| transcription factor binding | 1.01773884290535 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.840442755533537 | bayes_pls_golite062009 |
| centromeric DNA binding | 0.390904810536807 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0585868733603467 | bayes_pls_golite062009 |
|
Region A: Residues: [110-201] |
1 11 21 31 41 51
| | | | | |
1 PGRSDQEVVI EEPELHEDDG VEEEEEEDEV SEEEEPVHNE ELLDDSKDQQ NDKSTRSVAS 60
61 LLSRFQYKSA LDVGEHSDSS DIEVDHTKST DP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.575 | c.47.1 | Thioredoxin-like |
| View | Download | 0.274 | a.77.1 | DEATH domain |
| View | Download | 0.216 | d.42.1 | POZ domain |
| View | Download | 0.249 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.245 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.215 | a.1.1 | Globin-like |
| View | Download | 0.201 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.201 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.201 | a.118.8 | TPR-like |
