| Protein: | ERT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 529 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..529] | [1..529] |
|
|
8.0E-53 | [3..455] | [30..522] |
|
|
7.0E-48 | [13..229] | [8..227] |
|
|
3.0E-43 | [3..191] | [14..231] |
|
|
8.0E-38 | [21..199] | [4..183] |
|
|
4.0E-21 | [39..168] | [18..153] |
|
|
5.0E-21 | [39..162] | [19..150] |
|
Region A: Residues: [1-171] |
1 11 21 31 41 51
| | | | | |
1 MCTPDENDYK TSTDPDTSAN TNHTLEKKKR KKRKNTNVAC VNCSRLHVSC EAKRPCLRCI 60
61 SKGLTATCVD APRKKSKYLA GIPNRELPMN IQPDLPPRKI MIPIYNNSSN SSLNVNNMGE 120
121 QQKFTSPQHI VHKAKFLSNA ADSEYSILSN IIYQDTLSNK IPIDILYSNT N
|
| Detection Method: |  |
| Confidence: | 9.0 |
| Match: | 1hwtC_ |
| Description: | Hap1 (Cyp1); HAP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.46021754022299 | bayes_pls_golite062009 |
| nucleic acid binding | 3.26455198324141 | bayes_pls_golite062009 |
| DNA binding | 3.25588366587125 | bayes_pls_golite062009 |
| binding | 2.32645838605286 | bayes_pls_golite062009 |
| transcription factor activity | 2.20574348407066 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.54700248976411 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.34348800608209 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.28573362149629 | bayes_pls_golite062009 |
| transcription activator activity | 0.335097584119319 | bayes_pls_golite062009 |
|
Region A: Residues: [172-353] |
1 11 21 31 41 51
| | | | | |
1 STSNSTIGNS SNNSPTGTNT SPEETEMEKI RQLYSEQRAN IPPHPYPSSN QNVYSILLGP 60
61 NSAKIVASQV NLFANHFPLV PVDSADNSLN FKRLLPRDPS EKSSQINWDS SINQYYLNSE 120
121 TVTFPELAIP LKRRKNHLVS VSLESCSPDA ANIKSNVEWE HSLRYSTPME IYTSINAPFS 180
181 HT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [354-529] |
1 11 21 31 41 51
| | | | | |
1 PGFHHLLVYL KHRFNQQDLV KMCRSIAEFR PIFIACSVTL TEEDMIFMEQ CYQRTLLEYV 60
61 KFIAQIGTPT CIWRRNGQIS YVNEEFEILC GWTREELLNK MTFIVEIMDD ESVRDYFKTL 120
121 SKVAYRDFRG SEKMKVCRLL SPIKGKIIHC CCMWTLKRDV SGLPLMILGN FMPILN
|
| Detection Method: | |
| Confidence: | 13.346787 |
| Match: | PF00989 |
| Description: | PAS fold |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
