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View Structure Prediction Details

Protein: MRPS9
Organism: Saccharomyces cerevisiae
Length: 278 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS9.

Description E-value Query
Range		 Subject
Range
RT09_YEAST - 37S ribosomal protein S9, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
MRPS9 - Mitochondrial ribosomal protein of the small subunit
 2.0E-89 [1..278] [1..278]
RT09_KLUMA - 37S ribosomal protein S9, mitochondrial OS=Kluyveromyces marxianus GN=MRPS9 PE=3 SV=1
 2.0E-82 [1..278] [1..292]
RT09_CANAL - 40S ribosomal protein S9, mitochondrial OS=Candida albicans GN=MRPS9 PE=2 SV=1
RT09_CANAL - 37S ribosomal protein S9, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MRPS9...
 1.0E-77 [6..278] [58..336]
gi|220949328 - gi|220949328|gb|ACL87207.1| mRpS9-PA [synthetic construct]
mRpS9-PA - The gene mitochondrial ribosomal protein S9 is referred to in FlyBase by the symbol Dmel\mRpS9 (CG29...
 1.0E-69 [9..278] [119..395]
CE24890 - status:Confirmed UniProt:P34388 protein_id:AAK84520.1
 7.0E-64 [10..278] [337..633]
RS9_RHIME - 30S ribosomal protein S9 OS=Rhizobium meliloti (strain 1021) GN=rpsI PE=3 SV=1
RS9_RHIME - 30S ribosomal protein S9 OS=Rhizobium meliloti GN=rpsI PE=3 SV=1
 1.0E-48 [131..278] [8..155]
RS9_CAUCR - 30S ribosomal protein S9 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsI PE=3 SV=1
RS9_CAUCR - 30S ribosomal protein S9 OS=Caulobacter crescentus GN=rpsI PE=3 SV=1
RS9_CAUCN - 30S ribosomal protein S9 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsI PE=3 SV=1
 7.0E-48 [135..278] [14..157]
RS9_AGRFC - 30S ribosomal protein S9 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsI PE=3 SV=1
gi|25294629, gi|... - gi|25294633|pir||AI2729 30S ribosomal protein S9 [imported] - Agrobacterium tumefaciens (strain C58,...
 2.0E-47 [137..278] [14..155]
RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsI PE=3 SV=1
gi|254825043 - gi|254825043|ref|ZP_05230044.1| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-194]
gi|254854199 - gi|254854199|ref|ZP_05243547.1| 30S ribosomal protein S9 [Listeria monocytogenes FSL R2-503]
gi|254877846 - gi|254877846|ref|ZP_05250556.1| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-071]
gi|254992717 - gi|254992717|ref|ZP_05274907.1| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-064]
gi|255022865 - gi|255022865|ref|ZP_05294851.1| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-208]
gi|255520579 - gi|255520579|ref|ZP_05387816.1| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-175]
RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua GN=rpsI PE=3 SV=1
RS9_LISMF - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsI PE=3 SV=1
RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpsI PE=3 SV=1
RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpsI PE=3 SV=1
gi|254871298, gi... - gi|254871298|ref|ZP_05244008.1| 30S ribosomal protein S9 [Listeria monocytogenes FSL N1-017], gi|153...
gi|254931134, gi... - gi|254931134|ref|ZP_05264493.1| 30S ribosomal protein S9 [Listeria monocytogenes HPB2262], gi|153204...
gi|47018096, gi|... - gi|47093536|ref|ZP_00231297.1| ribosomal protein S9 [Listeria monocytogenes str. 4b H7858], gi|47018...
RS9_LISMH - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsI PE=3 SV=1
 3.0E-47 [151..278] [3..130]

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Predicted Domain #1
Region A:
Residues: [1-140] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRLSLFRR AALAPAPMRM SFRTIYQKTE DELPRRIVPK LATFYSANPN HEDRINRLER  60
   61 LLRKYIKLPS QNNNEAQQTK APWISFDEYA LIGGGTKLKP TQYTQLLYML NKLHNIDPQL 120
  121 TNDEITSELS QYYKKSSMLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-278] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNIKIKTLDE FGRSIAVGKR KSSTAKVFVV RGTGEILVNG RQLNDYFLKM KDRESIMYPL  60
   61 QVIESVGKYN IFATTSGGGP TGQAESIMHA IAKALVVFNP LLKSRLHKAG VLTRDYRHVE 120
  121 RKKPGKKKAR KMPTWVKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 264.70927
Match: 1fjgI_
Description: Ribosomal protein S9
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 7.32829196949019 bayes_pls_golite062009
structural molecule activity 6.75880680396215 bayes_pls_golite062009
3'-5'-exoribonuclease activity 1.56111033008721 bayes_pls_golite062009
RNA binding 1.40868766468494 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 1.35935222635763 bayes_pls_golite062009
exoribonuclease activity 1.31205157616894 bayes_pls_golite062009
3'-5' exonuclease activity 1.10842504252923 bayes_pls_golite062009
binding 0.923114523007774 bayes_pls_golite062009
catalytic activity 0.878454819018611 bayes_pls_golite062009
nucleic acid binding 0.555181608481691 bayes_pls_golite062009
protein binding 0.398523921130957 bayes_pls_golite062009
transcription regulator activity 0.368412900600617 bayes_pls_golite062009
ribonuclease activity 0.19921800066954 bayes_pls_golite062009
DNA binding 0.0880977286684361 bayes_pls_golite062009
mRNA binding 0.0491645692672305 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 6.9430052008157E-5 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle