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View Structure Prediction Details

Protein: MMS4
Organism: Saccharomyces cerevisiae
Length: 471 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMS4.

Description E-value Query
Range
Subject
Range
MMS4 - Subunit of the structure-specific Mms4p-Mus81p endonuclease that cleaves branched DNA; involved in r...
MMS4_YEAST - Crossover junction endonuclease MMS4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MMS...
0.0 [1..465] [1..465]

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Predicted Domain #1
Region A:
Residues: [1-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIVDFVED KDSRNDASIQ IIDGPSNVEI IALSESMDQD ECKRAHVSSA EMIPSSPQRK  60
   61 SVSNDVENVD LNKSIELSAP FFQDISISKL DDFSTTVNSI IDSSLRNENN AKGNAKKLLD 120
  121 DLISDEWSAD LESSGKKHNK SQYNLRDIAE KWGVQSLKNP EPIAVDCEYK TQGIGKTNSD 180
  181 ISDSPKSQIG AADILFDFPL SPVKHENPTE EKHNSIANEN SSPDNSLKPA GKQNHGEDGT 240
  241 SMAKRVYNKG EDEQEHLPKG KKRTIALSRT LINSTKLPDT VELNLSKFLD SSDSITTDVL 300
  301 STPAKGSNIV RTGSQPIFSN ANCFQEAKRS KTLTAEDPKC TKNTAREVSQ LENYIAYGQY 360
  361 YTREDSKNKI RHLLKENKNA FKRVNQIYRD NIKARSQMII EFSPSLLQLF KKGDSDLQQQ 420
  421 LAPAVVQSSY NDSMPLLRFL RKCDSIYDFS NDFYYPCDPK IVEENRFDSI L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle