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View Structure Prediction Details

Protein: YBR090C-A, NHP6B
Organism: Saccharomyces cerevisiae
Length: 99 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR090C-A, NHP6B.

Description E-value Query
Range
Subject
Range
gi|220945316, gi... - gi|220952556|gb|ACL88821.1| Sox21b-PA [synthetic construct], gi|220945316|gb|ACL85201.1| Sox21b-PA [...
Sox21b-PA, FBpp0... - The gene Sox21b is referred to in FlyBase by the symbol Dmel\Sox21b (CG32139, FBgn0042630). It is a ...
5.0E-33 [20..98] [241..319]
SOX3A_XENLA - Transcription factor Sox-3-A OS=Xenopus laevis GN=sox3-a PE=1 SV=1
5.0E-33 [10..98] [23..111]
SOX3_CHICK - Transcription factor SOX-3 OS=Gallus gallus GN=SOX3 PE=2 SV=1
5.0E-33 [5..98] [24..117]
gi|157278266, gi... - gi|6688924|emb|CAB65318.1| SOX3 protein [Oryzias latipes], gi|157278266|ref|NP_001098234.1| SOX3 pro...
2.0E-32 [6..98] [14..106]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATKEAKQP KEPKKRTTRR KKDPNAPKRR LSAYMFFANE NRDIVRSENP DVTFGQVGRI  60
   61 LGERWKALTA EEKQPYESKA QADKKRYESE KELYNATRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 284.0103
Match: 1cg7A_
Description: NHP6a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
DNA binding 5.15324651287773 bayes_pls_golite062009
nucleic acid binding 5.01228762819617 bayes_pls_golite062009
transcription regulator activity 4.9607192917135 bayes_pls_golite062009
sequence-specific DNA binding 4.06355503548774 bayes_pls_golite062009
transcription factor activity 3.82658263870186 bayes_pls_golite062009
binding 3.6211482127468 bayes_pls_golite062009
transcription activator activity 2.95665802871704 bayes_pls_golite062009
RNA polymerase II transcription factor activity 2.75319687398598 bayes_pls_golite062009
protein binding 2.18211240370246 bayes_pls_golite062009
chromatin binding 1.64428658020027 bayes_pls_golite062009
transcription repressor activity 1.53825678633232 bayes_pls_golite062009
transcription factor binding 1.10315330167937 bayes_pls_golite062009
DNA bending activity 0.87985209274756 bayes_pls_golite062009
crossed form four-way junction DNA binding 0.293183929205961 bayes_pls_golite062009
bent DNA binding 0.293183929205961 bayes_pls_golite062009
open form four-way junction DNA binding 0.293183929205961 bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding 0.261169200304829 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle