| Protein: | REB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 810 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..810] | [1..810] |
|
|
3.0E-85 | [6..419] | [98..529] |
|
|
2.0E-68 | [7..419] | [195..620] |
|
|
5.0E-66 | [191..553] | [22..391] |
|
|
4.0E-65 | [341..636] | [3..294] |
|
Region A: Residues: [1-248] |
1 11 21 31 41 51
| | | | | |
1 MPSGHNDKNA NQESVEEAVL KYVGVGLDHQ NHDPQLHTKD LENKHSKKQN IVESSSDVDV 60
61 NNNDDSNRNE DNNDDSENIS ALNANESSSN VDHANSNEQH NAVMDWYLRQ TAHNQQDDED 120
121 DENNNNTDNG NDSNNHFSQS DIVVDDDDDK NKKDAGVGVD DDHQSMAMAA VAAAYTLSKN 180
181 NNNNNSIAND SNSRKRQHDN GNNHENSQKK RKNNNDDDDR QIGNVDPELT TLGDADDNDT 240
241 NNDVIDRD
|
| Detection Method: |  |
| Confidence: | 7.26 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [249-373] |
1 11 21 31 41 51
| | | | | |
1 QLVHKAIIDA DSITQHPDFQ QYLNTAADTD DNEKLKHIKD HLMRTHGLNH QNKNHNDDTD 60
61 DLSNSTKQYS ELQKDSMLDS SLNKSRNYME VLPKVISQDT QPHQQKSPSH DNEAGSVDNS 120
121 EISQL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [374-472] |
1 11 21 31 41 51
| | | | | |
1 LQSAATKASS LVSLSSSSAT PSTSRSNNSK AFDKAEDAAL ERFINEYEAI ERLTRQQVCE 60
61 RIWSSDRPKD NFWNNIYKVL PYRSSSSIYK HMRRKYHIF
|
| Detection Method: | |
| Confidence: | 89.9897 |
| Match: | 1h88C_ |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [473-522] |
1 11 21 31 41 51
| | | | | |
1 EQRGKWTAEE EQELAKLCAE KEGQWAEIGK TLGRMPEDCR DRWRNYVKCG
|
| Detection Method: | |
| Confidence: | 89.9897 |
| Match: | 1h88C_ |
| Description: | c-Myb, DNA-binding domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [523-580] |
1 11 21 31 41 51
| | | | | |
1 TNRASNRWSV EEEELLKKVI SDMLEEAQQQ QSQLHPNLLE EEQHLLQDDQ NDHRNNDE
|
| Detection Method: | |
| Confidence: | 89.9897 |
| Match: | 1h88C_ |
| Description: | c-Myb, DNA-binding domain |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.232528774113254 | bayes_pls_golite062009 |
|
Region A: Residues: [581-657] |
1 11 21 31 41 51
| | | | | |
1 DDDDTASAAA AAAAAIQEQQ QLLQQKQQDD DDAIAAAAAA ASSSLGDNKD EDKPHDSLGI 60
61 QLDDNSQNSM VPAPSAT
|
| Detection Method: | |
| Confidence: | 10.4 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [658-720] |
1 11 21 31 41 51
| | | | | |
1 STHSKSLSNT IRRHNNKLRK SLMGNGKLDF KDIINWTIVS ERMGGTRSRI QCRYKWNKLV 60
61 KRE
|
| Detection Method: | |
| Confidence: | 10.4 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [721-810] |
1 11 21 31 41 51
| | | | | |
1 AIAKIQTVKD DDMLWIFEKL RDLGITEDSQ VDWDELAALK PGMKLNGLEL KLCYERMKKK 60
61 VKGYKQKSIN EISKELVDYF SSNISMKTEN
|
| Detection Method: | |
| Confidence: | 10.4 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
| Matching Structure (courtesy of the PDB): |
|
