| Protein: | UBP13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 688 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP13.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-98 | [1..674] | [1..673] |
|
|
9.0E-84 | [99..670] | [56..614] |
|
|
2.0E-82 | [318..670] | [38..380] |
|
|
3.0E-82 | [99..670] | [56..615] |
|
|
9.0E-82 | [100..670] | [57..601] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MIRRWLTISK SGKKKKAVND TITEEVEKVD FKPVNHDIND ELCYSESSDN PSSSLFVSNL 60
61 DTKETFLNED NNLQISSGLD YSSETCNQGS NYSQDGIFYI SNAKAINAYG GIITQGPEAP 120
121 ILAMKVSDSM PY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [133-188] |
1 11 21 31 41 51
| | | | | |
1 GDGSNKVFGY ENFGNTCYCN SVLQCLYNLS SLRENILQFP KKSRESDHPR KKEMRG
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [189-531] |
1 11 21 31 41 51
| | | | | |
1 KKPRIFTEAS FEKSIAGTNG HLPNPKPQSV DDGKPTPVNS VNSNTAGPSE KKSKFFKSFS 60
61 AKHVQDNNKK EGSPAILTTG KPSSRPQDAP PLIVETPNEP GAPSRLSFEN VTDRPPDVPR 120
121 KIIVGRVLNY ENPSRGSSNS NNLDLKGESN SSLSTPLDKK DTRRSSSSSQ ISPEHRKKSA 180
181 LIRGPVLNID HSLNGSDKAT LYSSLRDIFE CITENTYLTG VVSPSSFVDV LKRENVLFNT 240
241 TMHQDAHEFF NFLLNELSEY IERENKKIAA SDINSDSEPS KSKNFISDLF QGTLTNQIKC 300
301 LTCDNITSRD EPFLDFPIEV QGDEETDIQE ILKSYHQREM LNG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [532-597] |
1 11 21 31 41 51
| | | | | |
1 SNKFYCDECC GLQEAERLVG LKQLPDTLTL HLKRFKYSEK QNCNIKLFNN IHYPLTLNVC 60
61 SSINSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [598-688] |
1 11 21 31 41 51
| | | | | |
1 VCQKYELAGI VVHMGGGPQH GHYVSLCKHE KFGWLLFDDE TVEAVKEETV LEFTGESPNM 60
61 ATAYVCFIKR CIQTLLKRMI VKIWQKNKMI I
|
| Detection Method: | |
| Confidence: | 23.657577 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
