| Protein: | UBP13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 688 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP13.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-98 | [1..674] | [1..673] |
|
|
9.0E-84 | [99..670] | [56..614] |
|
|
2.0E-82 | [318..670] | [38..380] |
|
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3.0E-82 | [99..670] | [56..615] |
|
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9.0E-82 | [100..670] | [57..601] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MIRRWLTISK SGKKKKAVND TITEEVEKVD FKPVNHDIND ELCYSESSDN PSSSLFVSNL 60
61 DTKETFLNED NNLQISSGLD YSSETCNQGS NYSQDGIFYI SNAKAINAYG GIITQGPEAP 120
121 ILAMKVSDSM PY
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.341 | 0.308 | ubiquitin-specific protease activity | a.1.1 | Globin-like |
| View | Download | 0.306 | 0.102 | ubiquitin-specific protease activity | c.23.1 | CheY-like |
| View | Download | 0.404 | 0.015 | ubiquitin-specific protease activity | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.341 | 0.013 | ubiquitin-specific protease activity | c.121.1 | Ribose/Galactose isomerase RpiB/AlsB |
| View | Download | 0.283 | 0.011 | ubiquitin-specific protease activity | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.267 | N/A | N/A | a.118.9 | ENTH/VHS domain |
|
Region A: Residues: [133-188] |
1 11 21 31 41 51
| | | | | |
1 GDGSNKVFGY ENFGNTCYCN SVLQCLYNLS SLRENILQFP KKSRESDHPR KKEMRG
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [189-531] |
1 11 21 31 41 51
| | | | | |
1 KKPRIFTEAS FEKSIAGTNG HLPNPKPQSV DDGKPTPVNS VNSNTAGPSE KKSKFFKSFS 60
61 AKHVQDNNKK EGSPAILTTG KPSSRPQDAP PLIVETPNEP GAPSRLSFEN VTDRPPDVPR 120
121 KIIVGRVLNY ENPSRGSSNS NNLDLKGESN SSLSTPLDKK DTRRSSSSSQ ISPEHRKKSA 180
181 LIRGPVLNID HSLNGSDKAT LYSSLRDIFE CITENTYLTG VVSPSSFVDV LKRENVLFNT 240
241 TMHQDAHEFF NFLLNELSEY IERENKKIAA SDINSDSEPS KSKNFISDLF QGTLTNQIKC 300
301 LTCDNITSRD EPFLDFPIEV QGDEETDIQE ILKSYHQREM LNG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [532-597] |
1 11 21 31 41 51
| | | | | |
1 SNKFYCDECC GLQEAERLVG LKQLPDTLTL HLKRFKYSEK QNCNIKLFNN IHYPLTLNVC 60
61 SSINSK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.704 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.672 | d.17.1 | Cystatin/monellin |
| View | Download | 0.656 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.679 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.653 | d.17.1 | Cystatin/monellin |
| View | Download | 0.575 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.556 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.530 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.529 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.518 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.514 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.508 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.501 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.487 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.473 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.450 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.428 | d.17.1 | Cystatin/monellin |
| View | Download | 0.417 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.415 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.375 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.361 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.357 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.330 | b.34.1 | C-terminal domain of transcriptional repressors |
| View | Download | 0.329 | d.17.1 | Cystatin/monellin |
| View | Download | 0.327 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.320 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.301 | b.1.2 | Fibronectin type III |
| View | Download | 0.292 | d.17.1 | Cystatin/monellin |
| View | Download | 0.285 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.281 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.274 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.273 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.256 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.251 | d.17.1 | Cystatin/monellin |
| View | Download | 0.243 | b.36.1 | PDZ domain-like |
| View | Download | 0.242 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.241 | d.17.1 | Cystatin/monellin |
| View | Download | 0.232 | d.17.1 | Cystatin/monellin |
| View | Download | 0.231 | b.1.1 | Immunoglobulin |
| View | Download | 0.231 | d.17.1 | Cystatin/monellin |
| View | Download | 0.229 | b.1.7 | Actinoxanthin-like |
| View | Download | 0.218 | d.17.1 | Cystatin/monellin |
| View | Download | 0.216 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.211 | b.55.1 | PH domain-like |
| View | Download | 0.206 | d.17.1 | Cystatin/monellin |
| View | Download | 0.206 | d.17.1 | Cystatin/monellin |
| View | Download | 0.204 | b.89.1 | Cyanovirin-N |
| View | Download | 0.204 | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.200 | d.129.1 | TATA-box binding protein-like |
|
Region A: Residues: [598-688] |
1 11 21 31 41 51
| | | | | |
1 VCQKYELAGI VVHMGGGPQH GHYVSLCKHE KFGWLLFDDE TVEAVKEETV LEFTGESPNM 60
61 ATAYVCFIKR CIQTLLKRMI VKIWQKNKMI I
|
| Detection Method: | |
| Confidence: | 23.657577 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
